Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB69_RS08850 Genome accession   NZ_CP138949
Coordinates   1800897..1802036 (-) Length   379 a.a.
NCBI ID   WP_036912632.1    Uniprot ID   A0A0A2CSD9
Organism   Prochlorococcus sp. MIT 0701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1788840..1802912 1800897..1802036 within 0


Gene organization within MGE regions


Location: 1788840..1802912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB69_RS08795 - 1788840..1789589 (+) 750 WP_052039487.1 peptidylprolyl isomerase -
  SIB69_RS08800 - 1789576..1792479 (+) 2904 WP_052039486.1 peptidase domain-containing ABC transporter -
  SIB69_RS08805 - 1792590..1793591 (+) 1002 WP_036912619.1 HlyD family secretion protein -
  SIB69_RS08810 - 1794032..1794661 (-) 630 Protein_1726 ThiF family adenylyltransferase -
  SIB69_RS08815 - 1794690..1795157 (-) 468 WP_241466512.1 M67 family metallopeptidase -
  SIB69_RS08820 - 1795247..1795636 (+) 390 WP_011826894.1 CAAD domain-containing protein -
  SIB69_RS08825 - 1795659..1796552 (-) 894 WP_036912622.1 fructosamine kinase family protein -
  SIB69_RS08830 crtD 1796588..1798099 (+) 1512 WP_036912623.1 C-3',4' desaturase CrtD -
  SIB69_RS08835 - 1798059..1799003 (-) 945 WP_036912624.1 prephenate/arogenate dehydrogenase -
  SIB69_RS08840 - 1799062..1800507 (+) 1446 WP_036912626.1 helicase -
  SIB69_RS08845 - 1800549..1800788 (+) 240 WP_036912629.1 DUF2839 domain-containing protein -
  SIB69_RS08850 recA 1800897..1802036 (-) 1140 WP_036912632.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40575.34 Da        Isoelectric Point: 7.1454

>NTDB_id=906164 SIB69_RS08850 WP_036912632.1 1800897..1802036(-) (recA) [Prochlorococcus sp. MIT 0701]
MSVDVKSAQSSKSDSLQVEPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVV
VDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR
DNTITWLEQNSEAKEQIEVLVRQKLTEGSEVTANSMRPLAAAARTAAKKPAVSLASEAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=906164 SIB69_RS08850 WP_036912632.1 1800897..1802036(-) (recA) [Prochlorococcus sp. MIT 0701]
ATGTCAGTTGACGTGAAATCAGCTCAATCCTCTAAGTCTGATTCCCTCCAGGTTGAACCCCGTCCAGGTGAGCGGGACAA
AGCTCTCAATTTGGTGCTTGGTCAGATTGAACGCAATTTTGGCAAGGGTTCGATCATGCGCTTGGGGGATGCCTCTCGGA
TGCGGGTGGAGACCTTCCCTACAGGGGCGCTCACCCTTGATCTTGCCCTTGGCGGTGGGTACCCGAAAGGACGAGTCGTG
GAGGTGTACGGCCCGGAGAGTTCCGGTAAAACCACCCTCACCCTGCATGCCATCGCCGAGGTGCAGCGTCGTGGTGGCGT
CGCGGCTTTTGTGGATGCCGAGCATGCGCTCGATCCGGTTTACGCAGCCTCTTTAGGAGTGGATATTGAGAACCTGCTGG
TATCGCAGCCGGACACGGGGGAGATGGCTCTGGAGATTGTCGACCAGCTTGTGCGCTCTGCCGCCGTTGATATCGTTGTT
GTGGATTCCGTTGCTGCGCTCACTCCCCGGTCTGAGATCGAAGGTGAGATGGGCGATTTGGCTGTGGGTAGCCAGGCCCG
TCTGATGAGTCAGGCGATGCGCAAAATCACTGGCAACATCGGCAAATCCGGCTGCACGGTCATTTTTCTCAACCAGTTGC
GTCTCAAGATAGGCGTCACTTACGGCAACCCGGAGACGACGACTGGTGGCAATGCTCTCAAGTTTTACGCCTCCGTACGT
CTCGACATCCGCCGTATTCAAACGCTCAAGCGTGGCACGGAGGAGTATGGAATTCGTGCCAAGGTGAAGGTGGCCAAAAA
CAAGGTAGCCCCTCCGTTTCGTATCGCTGAGTTCGACATTCTTTTTGGTCGTGGCATCAGTACCTTGGGTTGCTTGCTTG
ACCTAGCTGAAGAAACCGGTGTTGTCATCCGTAAGGGTGCCTGGTACAGCTATGAGGGCGACAATATCGGTCAGGGACGT
GACAACACGATTACTTGGCTTGAGCAGAATTCTGAAGCCAAGGAGCAGATTGAAGTTCTTGTGCGTCAGAAACTCACTGA
AGGGTCTGAGGTGACCGCCAATTCCATGCGTCCGTTGGCGGCGGCGGCCCGCACTGCGGCTAAAAAACCTGCCGTCAGCT
TGGCATCTGAAGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2CSD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.335

0.559
  recA Acinetobacter baumannii D1279779

63.975

84.96

0.544
  recA Pseudomonas stutzeri DSM 10701

63.354

84.96

0.538
  recA Glaesserella parasuis strain SC1401

58.651

89.974

0.528
  recA Ralstonia pseudosolanacearum GMI1000

63.987

82.058

0.525
  recA Vibrio cholerae strain A1552

61.491

84.96

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

84.96

0.522
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.697

0.522
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Neisseria gonorrhoeae strain FA1090

59.036

87.599

0.517
  recA Streptococcus mitis NCTC 12261

53.74

95.251

0.512
  recA Helicobacter pylori strain NCTC11637

57.101

89.182

0.509
  recA Helicobacter pylori 26695

57.101

89.182

0.509
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.807

0.509
  recA Streptococcus pneumoniae R6

56.677

88.918

0.504
  recA Streptococcus pneumoniae Rx1

56.677

88.918

0.504
  recA Streptococcus pneumoniae D39

56.677

88.918

0.504
  recA Streptococcus pneumoniae TIGR4

56.677

88.918

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.879

84.697

0.499
  recA Latilactobacillus sakei subsp. sakei 23K

58.75

84.433

0.496
  recA Streptococcus mitis SK321

56.287

88.127

0.496
  recA Lactococcus lactis subsp. cremoris KW2

55.821

88.391

0.493
  recA Streptococcus mutans UA159

56.923

85.752

0.488
  recA Streptococcus pyogenes NZ131

55.046

86.28

0.475
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.646

83.377

0.472