Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB71_RS03040 Genome accession   NZ_CP138945
Coordinates   524400..525539 (+) Length   379 a.a.
NCBI ID   WP_036919375.1    Uniprot ID   A0A0A2BN89
Organism   Prochlorococcus sp. MIT 0603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 519400..530539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB71_RS03005 - 519797..520105 (-) 309 WP_036919781.1 50S ribosomal protein L23 -
  SIB71_RS03010 rplD 520098..520733 (-) 636 WP_036919366.1 50S ribosomal protein L4 -
  SIB71_RS03015 rplC 520735..521391 (-) 657 WP_036919368.1 50S ribosomal protein L3 -
  SIB71_RS03020 - 521784..522242 (+) 459 WP_036919370.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB71_RS03025 - 522212..523288 (+) 1077 WP_052043941.1 LdpA C-terminal domain-containing domain -
  SIB71_RS03035 - 523523..524293 (+) 771 WP_036919373.1 HAD family hydrolase -
  SIB71_RS03040 recA 524400..525539 (+) 1140 WP_036919375.1 recombinase RecA Machinery gene
  SIB71_RS03045 - 525550..525801 (-) 252 WP_036919376.1 DUF2839 domain-containing protein -
  SIB71_RS03050 - 525852..527192 (-) 1341 WP_241434037.1 helicase -
  SIB71_RS03055 - 527365..528210 (+) 846 WP_036919381.1 prephenate/arogenate dehydrogenase -
  SIB71_RS03060 crtD 528219..529730 (-) 1512 WP_036919785.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40668.45 Da        Isoelectric Point: 8.8453

>NTDB_id=906120 SIB71_RS03040 WP_036919375.1 524400..525539(+) (recA) [Prochlorococcus sp. MIT 0603]
MSVEIKPGQSLASSNNPNKTQSGEREKALSLVLGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLIRSSAVDLVV
VDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKIAPPFRIAEFDILFGKGISTLGCLLDMAEETNIVTRKGAWYSYEGDNIGQGR
DNTIIWLEENAEAKDKIERLVRQKLTEGSEVSANSMRPLATAARATSTTPVMRKASNAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=906120 SIB71_RS03040 WP_036919375.1 524400..525539(+) (recA) [Prochlorococcus sp. MIT 0603]
ATGTCAGTCGAAATCAAGCCAGGTCAATCATTAGCTTCATCCAATAATCCAAATAAGACACAATCTGGAGAACGAGAGAA
AGCACTCAGCCTTGTACTAGGACAAATAGAAAGGAATTTTGGTAAGGGCTCAATCATGCGACTGGGAGATGCCTCCAAAA
TGCGCGTGGAAACAATCTCAACGGGAGCACTAACCCTTGACCTTGCACTAGGCGGAGGTTACCCAAAGGGAAGAGTCGTA
GAAGTATATGGGCCAGAAAGCTCAGGCAAAACAACACTCACATTGCACGCAATCGCAGAAGTACAGAAACGTGGCGGAGT
GGCAGCCTTCGTAGACGCAGAGCATGCACTAGATCCTGTTTATGCTGCCTCTCTAGGTGTTGACATTGAGAATCTCCTTG
TATCACAACCAGATACAGGAGAGATGGCTTTGGAAATTGTAGATCAACTAATTCGATCCTCAGCTGTCGATCTTGTTGTT
GTTGACTCTGTTGCCGCACTGACTCCTCGATCAGAAATCGAAGGGGAAATGGGAGATCATGCAGTAGGCAGCCAAGCGAG
ATTAATGAGTCAAGCAATGCGAAAGATTACTGGTAATATTGGAAAATCAGGATGCACAGTAATCTTTCTAAATCAATTAC
GTCTTAAGATAGGTGTGACATACGGCAATCCCGAGACAACTACAGGTGGAAATGCTCTTAAGTTTTATGCCTCAGTTCGC
CTCGACATACGTAGAATTCAAACCCTTAAACGGGGGACAGAGGAGTATGGAATACGTGCAAAAGTAAAAGTTGCAAAGAA
CAAGATTGCGCCTCCATTTCGAATTGCAGAATTTGATATTCTTTTTGGAAAGGGAATCAGCACATTAGGATGTCTGCTTG
ATATGGCAGAAGAAACAAATATTGTCACTCGCAAAGGCGCTTGGTATAGCTATGAAGGAGATAACATTGGTCAAGGCCGA
GACAATACAATTATTTGGCTTGAAGAAAATGCAGAAGCAAAAGATAAAATAGAAAGATTAGTCCGCCAAAAGCTAACTGA
AGGGTCTGAGGTTAGCGCTAATTCAATGCGACCTTTAGCAACAGCAGCCCGTGCAACAAGCACAACCCCTGTAATGAGAA
AAGCGTCTAATGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2BN89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.257

87.335

0.57
  recA Pseudomonas stutzeri DSM 10701

59.155

93.668

0.554
  recA Acinetobacter baumannii D1279779

65.217

84.96

0.554
  recA Neisseria gonorrhoeae strain FA1090

59.42

91.029

0.541
  recA Neisseria gonorrhoeae MS11

59.42

91.029

0.541
  recA Neisseria gonorrhoeae MS11

59.42

91.029

0.541
  recA Helicobacter pylori strain NCTC11637

59.172

89.182

0.528
  recA Helicobacter pylori 26695

59.172

89.182

0.528
  recA Ralstonia pseudosolanacearum GMI1000

64.309

82.058

0.528
  recA Vibrio cholerae strain A1552

62.112

84.96

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

84.96

0.528
  recA Glaesserella parasuis strain SC1401

59.347

88.918

0.528
  recA Streptococcus pneumoniae R6

58.017

90.501

0.525
  recA Streptococcus pneumoniae TIGR4

58.017

90.501

0.525
  recA Streptococcus pneumoniae Rx1

58.017

90.501

0.525
  recA Streptococcus pneumoniae D39

58.017

90.501

0.525
  recA Bacillus subtilis subsp. subtilis str. 168

60.748

84.697

0.515
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.522

89.446

0.515
  recA Streptococcus mitis SK321

55.429

92.348

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.062

85.224

0.512
  recA Streptococcus mitis NCTC 12261

56.725

90.237

0.512
  recA Lactococcus lactis subsp. cremoris KW2

55.652

91.029

0.507
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.433

0.501
  recA Streptococcus mutans UA159

58.154

85.752

0.499
  recA Streptococcus pyogenes NZ131

56.881

86.28

0.491
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.723

87.599

0.488