Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB58_RS12175 Genome accession   NZ_CP138942
Coordinates   2184771..2185913 (-) Length   380 a.a.
NCBI ID   WP_067326106.1    Uniprot ID   A0A163ZBR0
Organism   Synechococcus sp. MIT S9504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2179771..2190913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB58_RS12150 crtD 2180123..2181637 (+) 1515 WP_066904412.1 C-3',4' desaturase CrtD -
  SIB58_RS12155 - 2181621..2182541 (-) 921 WP_067326150.1 prephenate/arogenate dehydrogenase -
  SIB58_RS12160 - 2182627..2184069 (+) 1443 WP_067326109.1 helicase -
  SIB58_RS12165 - 2184110..2184349 (+) 240 WP_066904418.1 DUF2839 domain-containing protein -
  SIB58_RS12170 - 2184426..2184770 (+) 345 WP_066904991.1 DUF1815 family protein -
  SIB58_RS12175 recA 2184771..2185913 (-) 1143 WP_067326106.1 recombinase RecA Machinery gene
  SIB58_RS12180 - 2186067..2186831 (-) 765 WP_231884151.1 HAD family hydrolase -
  SIB58_RS12190 - 2187025..2188659 (-) 1635 WP_067326104.1 AAA family ATPase -
  SIB58_RS12195 - 2188729..2189742 (-) 1014 WP_066904427.1 LdpA C-terminal domain-containing domain -
  SIB58_RS12200 - 2189775..2190236 (-) 462 WP_067326101.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40219.86 Da        Isoelectric Point: 6.5233

>NTDB_id=906089 SIB58_RS12175 WP_067326106.1 2184771..2185913(-) (recA) [Synechococcus sp. MIT S9504]
MPADVKASQSPGGDVRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKDAIEVLVRQKLTEGSEVSSNSMRPLAAAARSAAAKPLAKSAEVAAPSKDAA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=906089 SIB58_RS12175 WP_067326106.1 2184771..2185913(-) (recA) [Synechococcus sp. MIT S9504]
ATGCCAGCCGATGTGAAAGCCTCCCAGTCCCCCGGTGGAGATGTCCGCCCAGGTGAGCGCGATAAAGCGCTCAATCTCGT
GCTCGGTCAGATCGAGCGCAACTTCGGCAAGGGATCGATCATGCGTCTTGGAGACGCATCCCGAATGAGGGTGGAAACAA
TCTCCACCGGAGCCCTCACTCTTGATCTCGCTTTGGGTGGTGGATATCCCAAGGGACGTGTCGTTGAGGTCTATGGGCCC
GAAAGTTCTGGTAAGACCACGTTGACCTTGCATGCCATTGCCGAGGTTCAGCGCAATGGAGGCGTCGCAGCCTTTGTGGA
TGCCGAGCATGCTCTCGACCCGGTTTATGCCGCGTCACTGGGAGTGGATGTGGAAAATCTGCTGGTATCGCAGCCGGATA
CAGGCGAGATGGCGCTGGAGATTGTGGATCAGCTGGTCCGTTCCGCGGCTGTCGACATCGTGGTGGTTGATTCCGTCGCC
GCTCTCACGCCCCGTGCCGAGATCGAGGGTGAGATGGGAGACCTTGCGGTGGGCAGTCAGGCCCGCCTGATGAGCCAGGC
GATGCGCAAGATCACCGGCAACATCGGCAAGTCCGGTTGCACGGTGATTTTCCTCAATCAGCTGCGTCTCAAGATCGGCG
TCACCTATGGCAATCCAGAAACCACCACCGGTGGTAACGCCCTCAAGTTCTATGCCTCAGTGCGGCTTGATATCCGCCGT
ATTCAAACGCTGAAGCGCGGTACCGAGGAGTACGGCATCCGCGCCAAGGTGAAGGTGGCCAAGAACAAGGTGGCTCCCCC
TTTCCGCATCGCGGAATTCGACATTCTCTTCGGTCGGGGGATCAGCACGCTGGGTTGTCTGCTTGATCTGGCTGAGGAGA
CGGGTGTGGTCACTCGCAAGGGTGCCTGGTACAGCTATGAGGGCGACAACATCGGTCAGGGTCGTGACAACACCATTGGT
TGGCTGGAGCAAAATCCGGAGGCCAAGGATGCCATTGAAGTGTTGGTGCGGCAGAAGCTGACGGAAGGTTCGGAAGTGTC
GTCCAATTCCATGCGTCCTCTCGCGGCTGCGGCACGTTCGGCTGCTGCCAAGCCTCTCGCCAAGTCCGCTGAAGTTGCGG
CCCCGTCGAAGGACGCAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A163ZBR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

84.737

0.553
  recA Pseudomonas stutzeri DSM 10701

64.907

84.737

0.55
  recA Acinetobacter baumannii D1279779

63.975

84.737

0.542
  recA Neisseria gonorrhoeae MS11

61.145

87.368

0.534
  recA Neisseria gonorrhoeae MS11

61.145

87.368

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.145

87.368

0.534
  recA Glaesserella parasuis strain SC1401

61.774

86.053

0.532
  recA Ralstonia pseudosolanacearum GMI1000

64.952

81.842

0.532
  recA Vibrio cholerae strain A1552

62.422

84.737

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

84.737

0.529
  recA Bacillus subtilis subsp. subtilis str. 168

59.639

87.368

0.521
  recA Helicobacter pylori 26695

58.58

88.947

0.521
  recA Helicobacter pylori strain NCTC11637

58.58

88.947

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.967

86.579

0.511
  recA Streptococcus pneumoniae Rx1

57.101

88.947

0.508
  recA Streptococcus pneumoniae D39

57.101

88.947

0.508
  recA Streptococcus pneumoniae R6

57.101

88.947

0.508
  recA Streptococcus pneumoniae TIGR4

57.101

88.947

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.125

84.474

0.508
  recA Streptococcus mitis NCTC 12261

56.509

88.947

0.503
  recA Streptococcus mitis SK321

55.523

90.526

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.211

0.5
  recA Lactococcus lactis subsp. cremoris KW2

56.25

88.421

0.497
  recA Streptococcus mutans UA159

57.846

85.526

0.495
  recA Streptococcus pyogenes NZ131

55.963

86.053

0.482
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.595

83.158

0.479