Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB42_RS00560 Genome accession   NZ_CP138941
Coordinates   89843..90985 (-) Length   380 a.a.
NCBI ID   WP_067095349.1    Uniprot ID   A0A164BWH5
Organism   Synechococcus sp. MIT S9508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 84843..95985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB42_RS00535 crtD 85196..86710 (+) 1515 WP_067095358.1 C-3',4' desaturase CrtD -
  SIB42_RS00540 - 86694..87614 (-) 921 WP_067095602.1 prephenate/arogenate dehydrogenase -
  SIB42_RS00545 - 87700..89142 (+) 1443 WP_067095355.1 helicase -
  SIB42_RS00550 - 89183..89422 (+) 240 WP_067095352.1 DUF2839 domain-containing protein -
  SIB42_RS00555 - 89498..89842 (+) 345 WP_067095600.1 DUF1815 family protein -
  SIB42_RS00560 recA 89843..90985 (-) 1143 WP_067095349.1 recombinase RecA Machinery gene
  SIB42_RS00565 - 91138..91902 (-) 765 WP_231856415.1 HAD family hydrolase -
  SIB42_RS00575 - 92096..93730 (-) 1635 WP_067095347.1 AAA family ATPase -
  SIB42_RS00580 - 93800..94834 (-) 1035 WP_067095344.1 LdpA C-terminal domain-containing domain -
  SIB42_RS00585 - 94846..95307 (-) 462 WP_067095342.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40213.81 Da        Isoelectric Point: 6.5233

>NTDB_id=906073 SIB42_RS00560 WP_067095349.1 89843..90985(-) (recA) [Synechococcus sp. MIT S9508]
MPADVKASQSSGGDVRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNSEAKDAIEVLVRQKLTEGSEVTSNSMRPLAAAARSAAAKPLAKSAEVAAPSKDAA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=906073 SIB42_RS00560 WP_067095349.1 89843..90985(-) (recA) [Synechococcus sp. MIT S9508]
ATGCCAGCCGACGTGAAAGCCTCCCAGTCCTCCGGCGGAGATGTCCGCCCCGGTGAGCGCGATAAAGCGCTCAATCTCGT
GCTCGGTCAGATCGAGCGCAACTTCGGCAAGGGTTCGATCATGCGTCTCGGGGACGCATCCAGGATGAGGGTGGAAACCA
TTTCCACTGGAGCTCTCACCCTTGATCTCGCCCTCGGTGGTGGGTATCCCAAGGGACGAGTCGTTGAGGTCTACGGGCCC
GAAAGTTCCGGTAAGACCACGTTGACCTTGCATGCCATCGCCGAGGTTCAGCGCAATGGAGGCGTCGCTGCCTTTGTTGA
TGCCGAGCATGCGCTCGACCCGGTTTATGCGGCATCGCTGGGAGTGGATGTGGAAAACCTGCTGGTTTCTCAGCCGGACA
CCGGCGAGATGGCGCTGGAAATCGTGGACCAGTTGGTCCGCTCCGCGGCTGTCGACATCGTGGTGGTTGACTCTGTTGCC
GCTCTGACGCCCCGTGCTGAGATCGAAGGTGAGATGGGCGACCTTGCCGTGGGCAGTCAGGCCCGTCTGATGAGCCAGGC
GATGCGCAAGATCACGGGCAATATCGGCAAGTCCGGTTGCACGGTGATTTTCCTCAATCAACTGCGCCTCAAGATTGGTG
TCACCTACGGCAACCCAGAAACCACCACCGGTGGTAACGCTCTCAAGTTTTATGCCTCGGTGCGTCTTGATATCCGCCGT
ATTCAGACTCTCAAGCGCGGTACTGAGGAATACGGCATCCGCGCCAAGGTGAAGGTGGCCAAAAACAAAGTGGCTCCTCC
CTTCCGCATTGCGGAATTCGACATCCTCTTTGGCCGTGGGATCAGCACGCTGGGTTGTCTGCTTGATCTGGCGGAGGAGA
CGGGTGTCGTGACTCGCAAGGGTGCCTGGTACAGCTATGAGGGCGACAACATCGGTCAGGGTCGTGACAACACCATTGGT
TGGCTGGAGCAAAATTCGGAGGCCAAGGATGCCATTGAGGTTTTGGTGCGTCAGAAGCTGACGGAGGGTTCGGAAGTCAC
GTCCAACTCCATGCGTCCTCTTGCTGCTGCGGCACGCTCGGCTGCTGCCAAGCCTCTCGCCAAGTCCGCTGAGGTTGCTG
CGCCGTCGAAGGACGCAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164BWH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.105

0.558
  recA Pseudomonas stutzeri DSM 10701

64.596

84.737

0.547
  recA Acinetobacter baumannii D1279779

63.975

84.737

0.542
  recA Ralstonia pseudosolanacearum GMI1000

64.952

81.842

0.532
  recA Neisseria gonorrhoeae strain FA1090

60.843

87.368

0.532
  recA Neisseria gonorrhoeae MS11

60.843

87.368

0.532
  recA Neisseria gonorrhoeae MS11

60.843

87.368

0.532
  recA Glaesserella parasuis strain SC1401

61.468

86.053

0.529
  recA Vibrio cholerae strain A1552

62.112

84.737

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

84.737

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.639

87.368

0.521
  recA Helicobacter pylori 26695

58.58

88.947

0.521
  recA Helicobacter pylori strain NCTC11637

58.58

88.947

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.579

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

84.474

0.505
  recA Streptococcus pneumoniae Rx1

56.509

88.947

0.503
  recA Streptococcus pneumoniae D39

56.509

88.947

0.503
  recA Streptococcus pneumoniae R6

56.509

88.947

0.503
  recA Streptococcus pneumoniae TIGR4

56.509

88.947

0.503
  recA Streptococcus mitis SK321

55.233

90.526

0.5
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.211

0.5
  recA Streptococcus mitis NCTC 12261

56.213

88.947

0.5
  recA Lactococcus lactis subsp. cremoris KW2

56.418

88.158

0.497
  recA Streptococcus mutans UA159

57.538

85.526

0.492
  recA Streptococcus pyogenes NZ131

55.657

86.053

0.479
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.278

83.158

0.476