Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB64_RS04825 Genome accession   NZ_CP138939
Coordinates   1019717..1020850 (+) Length   377 a.a.
NCBI ID   WP_413442162.1    Uniprot ID   -
Organism   Synechococcus sp. MIT S1220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1014717..1025850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB64_RS04800 - 1015577..1016038 (+) 462 WP_413442158.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB64_RS04805 - 1016005..1017057 (+) 1053 WP_413442159.1 LdpA C-terminal domain-containing domain -
  SIB64_RS04810 - 1017080..1018711 (+) 1632 WP_413442160.1 AAA family ATPase -
  SIB64_RS04820 - 1018881..1019630 (+) 750 WP_413442161.1 HAD family hydrolase -
  SIB64_RS04825 recA 1019717..1020850 (+) 1134 WP_413442162.1 recombinase RecA Machinery gene
  SIB64_RS04830 - 1020860..1021225 (-) 366 WP_413442163.1 DUF1815 family protein -
  SIB64_RS04835 - 1021276..1021521 (-) 246 WP_413442164.1 DUF2839 domain-containing protein -
  SIB64_RS04840 - 1021577..1023022 (-) 1446 WP_413442165.1 helicase -
  SIB64_RS04845 - 1023106..1024017 (+) 912 WP_413442166.1 prephenate/arogenate dehydrogenase -
  SIB64_RS04850 crtD 1024025..1025524 (-) 1500 WP_413442167.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39963.63 Da        Isoelectric Point: 7.1459

>NTDB_id=906056 SIB64_RS04825 WP_413442162.1 1019717..1020850(+) (recA) [Synechococcus sp. MIT S1220]
MPAEMKSTAPGSDPRSSGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGP
ESSGKTTLTLHAIAEIQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKKGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTIT
WMEENPDTAATVETLVRQKLTEGSEVKANSMRPLAAAARSNAEKPAAGGKKESGAAA

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=906056 SIB64_RS04825 WP_413442162.1 1019717..1020850(+) (recA) [Synechococcus sp. MIT S1220]
ATGCCTGCAGAGATGAAATCCACCGCTCCCGGTTCCGATCCTCGTTCATCCGGTGAGCGCGACAAGGCCCTGAATCTTGT
GCTCGGTCAGATCGAGCGCAATTTTGGGAAGGGCTCGATCATGCGCCTTGGAGATGCCTCCAGGATGCGGGTGGAGACCA
TCTCCACCGGAGCTCTCACCCTTGATTTGGCCCTTGGTGGCGGCTATCCCAAGGGCCGTGTGGTCGAGATCTATGGTCCG
GAGAGCTCGGGCAAGACCACCCTCACCCTCCACGCCATTGCAGAGATTCAAAAACGTGGTGGTGTAGCTGCCTTCGTCGA
TGCAGAACATGCTCTCGATCCGGTCTACGCCGCGTCGCTCGGGGTGGATGTCGAGAATCTGCTGGTTTCTCAGCCGGATA
CCGGCGAAATGGCGTTGGAGATCGTCGACCAGCTGGTCCGCTCCGCCGCTGTCGACATCGTTGTGGTCGATTCGGTGGCT
GCGCTGACACCGCGTGCCGAGATCGAGGGTGAGATGGGAGATTTGGCTGTGGGCAGCCAGGCCCGGCTTATGAGTCAGGC
GATGCGCAAGATCACCGGCAACATCGGAAAGTCCGGGTGCACGGTGATCTTTCTCAACCAGTTGCGCCTCAAGATCGGAG
TCACCTATGGCAACCCTGAGACCACAACGGGTGGCAACGCGTTGAAGTTCTATGCCTCTGTACGGCTTGATATTCGCCGC
ATCCAAACGCTGAAGAAAGGAACGGAGGAATTCGGAATCCGGGCCAAGGTCAAAGTCGCCAAGAACAAAGTGGCGCCTCC
TTTCCGTATCGCCGAGTTCGACATCCTCTTCGGTCGGGGAATCAGCACGCTGGGTTGTCTCCTGGATTTGGCAGAGGAAA
CAGGAGTGGTGGTGAGGAAAGGAGCCTGGTACAGCTACGAGGGCGACAACATCGGCCAGGGTCGTGACAACACCATCACG
TGGATGGAGGAGAATCCCGATACTGCTGCAACGGTCGAAACACTGGTCCGTCAGAAACTTACTGAAGGGTCTGAAGTGAA
AGCCAATTCGATGCGACCGCTTGCAGCAGCTGCCAGGAGTAACGCTGAAAAGCCCGCTGCTGGGGGTAAAAAGGAATCCG
GAGCCGCGGCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.528

85.411

0.56
  recA Acinetobacter baumannii D1279779

64.907

85.411

0.554
  recA Pseudomonas stutzeri DSM 10701

64.286

85.411

0.549
  recA Neisseria gonorrhoeae MS11

60

91.512

0.549
  recA Neisseria gonorrhoeae strain FA1090

60

91.512

0.549
  recA Neisseria gonorrhoeae MS11

60

91.512

0.549
  recA Ralstonia pseudosolanacearum GMI1000

65.595

82.493

0.541
  recA Vibrio cholerae strain A1552

62.733

85.411

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

85.411

0.536
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.261

91.512

0.533
  recA Glaesserella parasuis strain SC1401

62.229

85.676

0.533
  recA Helicobacter pylori 26695

58.58

89.655

0.525
  recA Helicobacter pylori strain NCTC11637

58.58

89.655

0.525
  recA Streptococcus mitis NCTC 12261

55.932

93.899

0.525
  recA Streptococcus mitis SK321

55.524

93.634

0.52
  recA Bacillus subtilis subsp. subtilis str. 168

60.748

85.146

0.517
  recA Streptococcus pneumoniae Rx1

57.738

89.125

0.515
  recA Streptococcus pneumoniae D39

57.738

89.125

0.515
  recA Streptococcus pneumoniae R6

57.738

89.125

0.515
  recA Streptococcus pneumoniae TIGR4

57.738

89.125

0.515
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.125

85.146

0.512
  recA Latilactobacillus sakei subsp. sakei 23K

59.688

84.881

0.507
  recA Lactococcus lactis subsp. cremoris KW2

54.108

93.634

0.507
  recA Streptococcus mutans UA159

57.538

86.207

0.496
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.176

84.35

0.491
  recA Streptococcus pyogenes NZ131

55.657

86.737

0.483