Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | SIB78_RS09170 | Genome accession | NZ_CP138938 |
| Coordinates | 1870518..1871657 (-) | Length | 379 a.a. |
| NCBI ID | WP_036912632.1 | Uniprot ID | A0A0A2CSD9 |
| Organism | Prochlorococcus sp. MIT 0707 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1858461..1872533 | 1870518..1871657 | within | 0 |
Gene organization within MGE regions
Location: 1858461..1872533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SIB78_RS09115 | - | 1858461..1859210 (+) | 750 | WP_052039487.1 | peptidylprolyl isomerase | - |
| SIB78_RS09120 | - | 1859197..1862100 (+) | 2904 | WP_052039486.1 | peptidase domain-containing ABC transporter | - |
| SIB78_RS09125 | - | 1862211..1863212 (+) | 1002 | WP_036912619.1 | HlyD family secretion protein | - |
| SIB78_RS09130 | - | 1863653..1864282 (-) | 630 | Protein_1784 | ThiF family adenylyltransferase | - |
| SIB78_RS09135 | - | 1864311..1864778 (-) | 468 | WP_241466512.1 | M67 family metallopeptidase | - |
| SIB78_RS09140 | - | 1864868..1865257 (+) | 390 | WP_011826894.1 | CAAD domain-containing protein | - |
| SIB78_RS09145 | - | 1865280..1866173 (-) | 894 | WP_036912622.1 | fructosamine kinase family protein | - |
| SIB78_RS09150 | crtD | 1866209..1867720 (+) | 1512 | WP_036912623.1 | C-3',4' desaturase CrtD | - |
| SIB78_RS09155 | - | 1867680..1868624 (-) | 945 | WP_036912624.1 | prephenate/arogenate dehydrogenase | - |
| SIB78_RS09160 | - | 1868683..1870128 (+) | 1446 | WP_036912626.1 | helicase | - |
| SIB78_RS09165 | - | 1870170..1870409 (+) | 240 | WP_036912629.1 | DUF2839 domain-containing protein | - |
| SIB78_RS09170 | recA | 1870518..1871657 (-) | 1140 | WP_036912632.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 379 a.a. Molecular weight: 40575.34 Da Isoelectric Point: 7.1454
>NTDB_id=906045 SIB78_RS09170 WP_036912632.1 1870518..1871657(-) (recA) [Prochlorococcus sp. MIT 0707]
MSVDVKSAQSSKSDSLQVEPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVV
VDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR
DNTITWLEQNSEAKEQIEVLVRQKLTEGSEVTANSMRPLAAAARTAAKKPAVSLASEAA
MSVDVKSAQSSKSDSLQVEPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVV
VDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR
DNTITWLEQNSEAKEQIEVLVRQKLTEGSEVTANSMRPLAAAARTAAKKPAVSLASEAA
Nucleotide
Download Length: 1140 bp
>NTDB_id=906045 SIB78_RS09170 WP_036912632.1 1870518..1871657(-) (recA) [Prochlorococcus sp. MIT 0707]
ATGTCAGTTGACGTGAAATCAGCTCAATCCTCTAAGTCTGATTCCCTCCAGGTTGAACCCCGTCCAGGTGAGCGGGACAA
AGCTCTCAATTTGGTGCTTGGTCAGATTGAACGCAATTTTGGCAAGGGTTCGATCATGCGCTTGGGGGATGCCTCTCGGA
TGCGGGTGGAGACCTTCCCTACAGGGGCGCTCACCCTTGATCTTGCCCTTGGCGGTGGGTACCCGAAAGGACGAGTCGTG
GAGGTGTACGGCCCGGAGAGTTCCGGTAAAACCACCCTCACCCTGCATGCCATCGCCGAGGTGCAGCGTCGTGGTGGCGT
CGCGGCTTTTGTGGATGCCGAGCATGCGCTCGATCCGGTTTACGCAGCCTCTTTAGGAGTGGATATTGAGAACCTGCTGG
TATCGCAGCCGGACACGGGGGAGATGGCTCTGGAGATTGTCGACCAGCTTGTGCGCTCTGCCGCCGTTGATATCGTTGTT
GTGGATTCCGTTGCTGCGCTCACTCCCCGGTCTGAGATCGAAGGTGAGATGGGCGATTTGGCTGTGGGTAGCCAGGCCCG
TCTGATGAGTCAGGCGATGCGCAAAATCACTGGCAACATCGGCAAATCCGGCTGCACGGTCATTTTTCTCAACCAGTTGC
GTCTCAAGATAGGCGTCACTTACGGCAACCCGGAGACGACGACTGGTGGCAATGCTCTCAAGTTTTACGCCTCCGTACGT
CTCGACATCCGCCGTATTCAAACGCTCAAGCGTGGCACGGAGGAGTATGGAATTCGTGCCAAGGTGAAGGTGGCCAAAAA
CAAGGTAGCCCCTCCGTTTCGTATCGCTGAGTTCGACATTCTTTTTGGTCGTGGCATCAGTACCTTGGGTTGCTTGCTTG
ACCTAGCTGAAGAAACCGGTGTTGTCATCCGTAAGGGTGCCTGGTACAGCTATGAGGGCGACAATATCGGTCAGGGACGT
GACAACACGATTACTTGGCTTGAGCAGAATTCTGAAGCCAAGGAGCAGATTGAAGTTCTTGTGCGTCAGAAACTCACTGA
AGGGTCTGAGGTGACCGCCAATTCCATGCGTCCGTTGGCGGCGGCGGCCCGCACTGCGGCTAAAAAACCTGCCGTCAGCT
TGGCATCTGAAGCTGCTTAA
ATGTCAGTTGACGTGAAATCAGCTCAATCCTCTAAGTCTGATTCCCTCCAGGTTGAACCCCGTCCAGGTGAGCGGGACAA
AGCTCTCAATTTGGTGCTTGGTCAGATTGAACGCAATTTTGGCAAGGGTTCGATCATGCGCTTGGGGGATGCCTCTCGGA
TGCGGGTGGAGACCTTCCCTACAGGGGCGCTCACCCTTGATCTTGCCCTTGGCGGTGGGTACCCGAAAGGACGAGTCGTG
GAGGTGTACGGCCCGGAGAGTTCCGGTAAAACCACCCTCACCCTGCATGCCATCGCCGAGGTGCAGCGTCGTGGTGGCGT
CGCGGCTTTTGTGGATGCCGAGCATGCGCTCGATCCGGTTTACGCAGCCTCTTTAGGAGTGGATATTGAGAACCTGCTGG
TATCGCAGCCGGACACGGGGGAGATGGCTCTGGAGATTGTCGACCAGCTTGTGCGCTCTGCCGCCGTTGATATCGTTGTT
GTGGATTCCGTTGCTGCGCTCACTCCCCGGTCTGAGATCGAAGGTGAGATGGGCGATTTGGCTGTGGGTAGCCAGGCCCG
TCTGATGAGTCAGGCGATGCGCAAAATCACTGGCAACATCGGCAAATCCGGCTGCACGGTCATTTTTCTCAACCAGTTGC
GTCTCAAGATAGGCGTCACTTACGGCAACCCGGAGACGACGACTGGTGGCAATGCTCTCAAGTTTTACGCCTCCGTACGT
CTCGACATCCGCCGTATTCAAACGCTCAAGCGTGGCACGGAGGAGTATGGAATTCGTGCCAAGGTGAAGGTGGCCAAAAA
CAAGGTAGCCCCTCCGTTTCGTATCGCTGAGTTCGACATTCTTTTTGGTCGTGGCATCAGTACCTTGGGTTGCTTGCTTG
ACCTAGCTGAAGAAACCGGTGTTGTCATCCGTAAGGGTGCCTGGTACAGCTATGAGGGCGACAATATCGGTCAGGGACGT
GACAACACGATTACTTGGCTTGAGCAGAATTCTGAAGCCAAGGAGCAGATTGAAGTTCTTGTGCGTCAGAAACTCACTGA
AGGGTCTGAGGTGACCGCCAATTCCATGCGTCCGTTGGCGGCGGCGGCCCGCACTGCGGCTAAAAAACCTGCCGTCAGCT
TGGCATCTGAAGCTGCTTAA
Similar proteins
Only experimentally validated proteins are listed.