Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB62_RS02470 Genome accession   NZ_CP138934
Coordinates   423707..424804 (+) Length   365 a.a.
NCBI ID   WP_032525077.1    Uniprot ID   A0A0A1Z817
Organism   Prochlorococcus marinus str. GP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 418707..429804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB62_RS02435 - 419285..419587 (-) 303 WP_011819168.1 50S ribosomal protein L23 -
  SIB62_RS02440 rplD 419584..420216 (-) 633 WP_032525073.1 50S ribosomal protein L4 -
  SIB62_RS02445 rplC 420213..420866 (-) 654 WP_032525074.1 50S ribosomal protein L3 -
  SIB62_RS02450 ndhN 421146..421622 (+) 477 WP_025965040.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB62_RS02455 - 421628..422635 (+) 1008 WP_032525075.1 LdpA C-terminal domain-containing domain -
  SIB62_RS02465 - 422818..423594 (+) 777 WP_032525076.1 HAD family hydrolase -
  SIB62_RS02470 recA 423707..424804 (+) 1098 WP_032525077.1 recombinase RecA Machinery gene
  SIB62_RS02475 - 424807..425052 (-) 246 WP_025895071.1 DUF2839 domain-containing protein -
  SIB62_RS02480 - 425082..426530 (-) 1449 WP_032525078.1 DNA helicase -
  SIB62_RS02485 - 426625..427464 (+) 840 WP_032525079.1 prephenate/arogenate dehydrogenase -
  SIB62_RS02490 crtD 427454..428959 (-) 1506 WP_032525080.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39443.10 Da        Isoelectric Point: 6.3069

>NTDB_id=906016 SIB62_RS02470 WP_032525077.1 423707..424804(+) (recA) [Prochlorococcus marinus str. GP2]
MSLEENKKTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=906016 SIB62_RS02470 WP_032525077.1 423707..424804(+) (recA) [Prochlorococcus marinus str. GP2]
ATGAGCCTTGAAGAAAACAAAAAAACTGAATCAAAAGAAAAAGACAAGGCATTAAGTCTTGTCTTAGGTCAAATAGAAAG
AAATTTTGGACGAGGTTCAATAATGAGACTTGGTGACGCCTCAAGAATGAAAGTAGAAACAATATCTACTGGAGCGCTCA
CCTTAGATTTAGCATTAGGAGGAGGCTATCCAAAAGGAAGAGTAGTAGAAGTTTACGGACCAGAAAGTTCAGGAAAAACT
ACATTAACGCTTCACGCGATTGCGGAAGTCCAAAAAAATGGAGGAGTAGCTGCATTTGTAGATGCTGAGCATGCACTCGA
TCCAGTTTATGCGGCCTCTTTAGGTGTTGATGTTGAAAATTTATTAGTTTCACAGCCAGATACTGGTGAAATGGCTCTAG
AAATAGTTGACCAACTTATAAGATCGAGTGCGGTAGATCTTGTAGTTGTTGACTCGGTCGCAGCACTAACCCCAAGAGCC
GAGATAGAAGGAGAGATGGGAGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGCCAAGCAATGAGGAAAATAACAGG
AAATATTGGCAAATCTGGATGTACGGTAATATTCCTGAATCAATTACGCCTAAAAATTGGCGTTACATACGGTAATCCAG
AAACAACAACTGGAGGTAATGCATTAAAATTTTACGCCTCAGTAAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAGGAATATGGCATAAGAGCAAAAGTGAAAGTAGCAAAAAACAAAGTTGCACCACCATTTAGAATTGCAGAATT
TGATATTCTCTTTGGGAAAGGTATTAGTACAACAGGATGCTTATTAGATTTAGCAGAAGAGACTAATATCATCATAAGGA
GAGGTGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAATACAATTATTTGGCTTGATCAAAACTTA
GAAATTAGGAATAAAGTAGAATCTATGGTTAAAGAGAAATTAACAGAAGGAACTGAAGTCAGTTCTAATTCAATGAAAGC
ATTAAATAGCAATCCTGCTAACACAATCGCTGTTAATGATATAAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1Z817

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Pseudomonas stutzeri DSM 10701

61.562

91.233

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.738

100

0.559
  recA Streptococcus pneumoniae D39

55.738

100

0.559
  recA Streptococcus pneumoniae R6

55.738

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.738

100

0.559
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Helicobacter pylori strain NCTC11637

60.121

90.685

0.545
  recA Helicobacter pylori 26695

60.121

90.685

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

88.219

0.542
  recA Vibrio cholerae strain A1552

61.491

88.219

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

90.137

0.537
  recA Streptococcus mitis NCTC 12261

56.034

95.342

0.534
  recA Streptococcus mitis SK321

55.747

95.342

0.532
  recA Streptococcus pyogenes NZ131

53.186

98.904

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

87.671

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

90.137

0.51
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51