Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB40_RS00700 Genome accession   NZ_CP138929
Coordinates   123345..124442 (+) Length   365 a.a.
NCBI ID   WP_032513743.1    Uniprot ID   A0A0A1ZUD1
Organism   Prochlorococcus marinus str. MIT 9107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118345..129442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB40_RS00665 - 118926..119228 (-) 303 WP_032513749.1 50S ribosomal protein L23 -
  SIB40_RS00670 rplD 119225..119857 (-) 633 WP_032513747.1 50S ribosomal protein L4 -
  SIB40_RS00675 rplC 119854..120507 (-) 654 WP_032513746.1 50S ribosomal protein L3 -
  SIB40_RS00680 ndhN 120787..121257 (+) 471 WP_032513745.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB40_RS00685 - 121269..122273 (+) 1005 WP_032513744.1 LdpA C-terminal domain-containing domain -
  SIB40_RS00695 - 122459..123232 (+) 774 WP_032513818.1 HAD family hydrolase -
  SIB40_RS00700 recA 123345..124442 (+) 1098 WP_032513743.1 recombinase RecA Machinery gene
  SIB40_RS00705 - 124445..124690 (-) 246 WP_032513742.1 DUF2839 domain-containing protein -
  SIB40_RS00710 - 124720..126168 (-) 1449 WP_032513741.1 DNA helicase -
  SIB40_RS00715 - 126262..127101 (+) 840 WP_032513740.1 prephenate/arogenate dehydrogenase -
  SIB40_RS00720 crtD 127091..128596 (-) 1506 WP_032513817.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39455.11 Da        Isoelectric Point: 6.3069

>NTDB_id=905977 SIB40_RS00700 WP_032513743.1 123345..124442(+) (recA) [Prochlorococcus marinus str. MIT 9107]
MNLEEKKKTESTEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQSL
EIRNKIESMVKEKLTEGTEVSSNSMKALNNNPANTPAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=905977 SIB40_RS00700 WP_032513743.1 123345..124442(+) (recA) [Prochlorococcus marinus str. MIT 9107]
ATGAATCTTGAAGAAAAGAAAAAAACTGAATCGACAGAAAAAGACAAAGCTTTAAGTCTAGTCTTGGGTCAAATAGAAAG
AAATTTCGGACGAGGATCAATAATGAGACTTGGCGATGCATCAAGAATGAAAGTAGAAACAATATCTACAGGGGCACTAA
CATTAGATTTAGCCTTAGGAGGAGGCTATCCAAAAGGAAGAGTAGTAGAAGTATACGGACCAGAAAGTTCAGGGAAAACT
ACATTGACTCTTCACGCGATAGCAGAAGTCCAAAAAAATGGCGGAGTAGCTGCATTTGTAGATGCTGAGCATGCACTTGA
TCCAGTTTATGCAGCCTCGCTAGGGGTTGATGTTGAAAATTTGTTAGTTTCACAACCAGATACAGGTGAAATGGCTCTAG
AAATAGTTGACCAGCTTATAAGATCGAGTGCAGTAGATCTCGTCGTTGTTGACTCAGTAGCAGCACTAACTCCAAGAGCC
GAGATAGAGGGAGAAATGGGAGATCATGTAATTGGAAGCCAAGCAAGGTTAATGAGTCAAGCAATGAGAAAAATAACCGG
GAATATTGGTAAATCTGGATGTACAGTAATATTCCTGAATCAATTACGCCTAAAAATCGGCGTTACATACGGCAATCCAG
AAACAACCACAGGAGGAAATGCATTAAAATTTTATGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGGACAGAAGAATACGGCATAAGAGCAAAAGTGAAAGTAGCAAAAAATAAGGTTGCGCCTCCATTTAGAATTGCAGAGTT
TGATATCCTCTTCGGAAAGGGTATTAGTACGACAGGATGTTTATTGGATTTAGCAGAAGAGACTAATATTATAATAAGGA
GAGGCGCTTGGTATAGTTATGAAGGGGAAAATATTGGACAGGGAAGAGATAATACAATTATTTGGCTTGATCAAAGCTTA
GAAATTAGAAATAAAATAGAATCTATGGTTAAAGAGAAATTAACAGAAGGAACTGAAGTTAGCTCTAATTCAATGAAAGC
ATTAAATAACAATCCTGCTAATACACCCGCTGTTAATGATATTAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1ZUD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Pseudomonas stutzeri DSM 10701

59.885

95.616

0.573
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.858

100

0.562
  recA Streptococcus pneumoniae D39

55.858

100

0.562
  recA Streptococcus pneumoniae R6

55.858

100

0.562
  recA Streptococcus pneumoniae TIGR4

55.858

100

0.562
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Helicobacter pylori strain NCTC11637

60.606

90.411

0.548
  recA Helicobacter pylori 26695

60.606

90.411

0.548
  recA Glaesserella parasuis strain SC1401

60.79

90.137

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.876

92.603

0.545
  recA Streptococcus mitis NCTC 12261

54.098

100

0.542
  recA Vibrio cholerae strain A1552

61.18

88.219

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

88.219

0.54
  recA Streptococcus mitis SK321

55.587

95.616

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.627

88.219

0.526
  recA Lactococcus lactis subsp. cremoris KW2

56.418

91.781

0.518
  recA Latilactobacillus sakei subsp. sakei 23K

58.75

87.671

0.515
  recA Streptococcus pyogenes NZ131

55.952

92.055

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.891

90.685

0.507