Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB60_RS10480 Genome accession   NZ_CP138928
Coordinates   1948938..1950086 (-) Length   382 a.a.
NCBI ID   WP_006042198.1    Uniprot ID   A4CSK9
Organism   Synechococcus sp. WH 8017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1943938..1955086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB60_RS10455 crtD 1944277..1945791 (+) 1515 WP_006042193.1 C-3',4' desaturase CrtD -
  SIB60_RS10460 - 1945775..1946680 (-) 906 WP_038005150.1 prephenate/arogenate dehydrogenase -
  SIB60_RS10465 - 1946776..1948224 (+) 1449 WP_006042195.1 hypothetical protein -
  SIB60_RS10470 - 1948262..1948501 (+) 240 WP_006042196.1 DUF2839 domain-containing protein -
  SIB60_RS10475 - 1948577..1948921 (+) 345 WP_038005152.1 DUF1815 family protein -
  SIB60_RS10480 recA 1948938..1950086 (-) 1149 WP_006042198.1 recombinase RecA Machinery gene
  SIB60_RS10485 - 1950239..1951003 (-) 765 WP_038005155.1 HAD family hydrolase -
  SIB60_RS10495 - 1951196..1952836 (-) 1641 WP_006042200.1 AAA family ATPase -
  SIB60_RS10500 - 1952909..1953904 (-) 996 WP_006042201.1 LdpA C-terminal domain-containing domain -
  SIB60_RS10505 - 1953949..1954410 (-) 462 WP_006042202.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB60_RS10510 - 1954689..1954820 (-) 132 WP_413331030.1 hypothetical protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40564.27 Da        Isoelectric Point: 7.1450

>NTDB_id=905970 SIB60_RS10480 WP_006042198.1 1948938..1950086(-) (recA) [Synechococcus sp. WH 8017]
MPVEVKASQSSGGDVRPGERDQALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPDAKDTIETLVRQKLTEGSEVTSNSMRPLAAAARSAAAKPAAKAPEAQLDVKTKGAA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=905970 SIB60_RS10480 WP_006042198.1 1948938..1950086(-) (recA) [Synechococcus sp. WH 8017]
ATGCCAGTCGAAGTGAAAGCCTCCCAGTCCTCCGGTGGAGATGTCCGCCCCGGTGAGCGTGATCAGGCGCTCAATCTCGT
GCTCGGGCAAATCGAGCGCAATTTCGGGAAGGGGTCGATCATGCGTCTCGGAGACGCGTCACGGATGCGGGTGGAGACCA
TCTCCACCGGAGCGCTCACCCTTGACCTTGCTTTGGGGGGTGGTTATCCCAAGGGGCGTGTTGTTGAGGTTTACGGGCCG
GAAAGTTCCGGTAAGACCACGCTGACGTTGCATGCCATCGCCGAGGTGCAGCGACGTGGGGGCGTTGCGGCCTTCGTGGA
TGCTGAGCATGCACTCGATCCTGTCTATGCCGCCTCGCTTGGTGTCGACATCGAGAATCTGTTGGTGTCTCAGCCCGACA
CCGGTGAGATGGCGCTTGAGATCGTCGACCAGCTTGTGCGTTCTGCTGCCGTTGACATCGTGGTGGTTGACTCTGTCGCG
GCGCTGACGCCCCGTGCTGAGATCGAGGGAGAGATGGGCGATCTGGCGGTGGGCGCCCAGGCGCGTCTGATGAGCCAAGC
CATGCGCAAGATCACAGGCAACATCGGCAAATCCGGTTGCACCGTGATTTTCCTCAATCAGCTGCGTTTGAAAATCGGGG
TCACCTACGGCAACCCGGAAACAACAACTGGCGGTAATGCTCTCAAGTTCTATGCATCGGTGCGCCTTGACATCCGTCGC
ATTCAGACGCTGAAGCGAGGCACCGAGGAATACGGAATCCGGGCGAAGGTGAAGGTGGCTAAGAACAAGGTGGCGCCTCC
CTTCCGTATCGCCGAATTTGACATTCTCTTCGGCCGTGGCATCAGCACGCTGGGGTGTTTGCTTGATCTGGCAGAGGAGA
CAGGCGTGGTGACCCGCAAAGGAGCCTGGTACAGCTATGAGGGCGACAACATCGGCCAGGGACGGGACAACACCATTGGG
TGGTTAGAGCAAAACCCTGACGCCAAGGACACGATCGAAACGTTGGTTCGCCAAAAGTTGACTGAGGGTTCTGAGGTGAC
CTCCAATTCCATGCGCCCTCTGGCTGCCGCCGCGCGCTCGGCTGCAGCCAAACCCGCCGCCAAGGCCCCTGAGGCCCAGC
TGGATGTCAAGACCAAGGGGGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4CSK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.35

86.649

0.558
  recA Pseudomonas stutzeri DSM 10701

64.286

84.293

0.542
  recA Acinetobacter baumannii D1279779

63.975

84.293

0.539
  recA Glaesserella parasuis strain SC1401

61.774

85.602

0.529
  recA Vibrio cholerae strain A1552

62.422

84.293

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

84.293

0.526
  recA Ralstonia pseudosolanacearum GMI1000

64.309

81.414

0.524
  recA Neisseria gonorrhoeae MS11

60.241

86.911

0.524
  recA Neisseria gonorrhoeae MS11

60.241

86.911

0.524
  recA Neisseria gonorrhoeae strain FA1090

60.241

86.911

0.524
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

84.031

0.521
  recA Helicobacter pylori 26695

57.988

88.482

0.513
  recA Helicobacter pylori strain NCTC11637

57.988

88.482

0.513
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.359

86.126

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

60

83.77

0.503
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.502

84.031

0.5
  recA Streptococcus pneumoniae Rx1

56.509

88.482

0.5
  recA Streptococcus pneumoniae D39

56.509

88.482

0.5
  recA Streptococcus pneumoniae R6

56.509

88.482

0.5
  recA Streptococcus pneumoniae TIGR4

56.509

88.482

0.5
  recA Streptococcus mitis SK321

55.233

90.052

0.497
  recA Streptococcus mitis NCTC 12261

56.213

88.482

0.497
  recA Lactococcus lactis subsp. cremoris KW2

56.716

87.696

0.497
  recA Streptococcus mutans UA159

57.538

85.079

0.49
  recA Streptococcus pyogenes NZ131

55.963

85.602

0.479
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.488

85.864

0.476