Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB50_RS12315 Genome accession   NZ_CP138924
Coordinates   2475886..2477025 (+) Length   379 a.a.
NCBI ID   WP_036912632.1    Uniprot ID   A0A0A2CSD9
Organism   Prochlorococcus sp. MIT 0714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2470886..2482025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB50_RS12290 - 2471568..2472029 (+) 462 WP_036912635.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB50_RS12295 - 2472101..2473072 (+) 972 WP_036912739.1 LdpA C-terminal domain-containing domain -
  SIB50_RS12300 - 2473127..2474764 (+) 1638 WP_036912736.1 AAA family ATPase -
  SIB50_RS12310 - 2474956..2475732 (+) 777 WP_036912733.1 HAD family hydrolase -
  SIB50_RS12315 recA 2475886..2477025 (+) 1140 WP_036912632.1 recombinase RecA Machinery gene
  SIB50_RS12320 - 2477134..2477373 (-) 240 WP_036912629.1 DUF2839 domain-containing protein -
  SIB50_RS12325 - 2477415..2478860 (-) 1446 WP_036912626.1 helicase -
  SIB50_RS12330 - 2478919..2479863 (+) 945 WP_036912624.1 prephenate/arogenate dehydrogenase -
  SIB50_RS12335 crtD 2479823..2481334 (-) 1512 WP_036912623.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40575.34 Da        Isoelectric Point: 7.1454

>NTDB_id=905948 SIB50_RS12315 WP_036912632.1 2475886..2477025(+) (recA) [Prochlorococcus sp. MIT 0714]
MSVDVKSAQSSKSDSLQVEPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVV
VDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR
DNTITWLEQNSEAKEQIEVLVRQKLTEGSEVTANSMRPLAAAARTAAKKPAVSLASEAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=905948 SIB50_RS12315 WP_036912632.1 2475886..2477025(+) (recA) [Prochlorococcus sp. MIT 0714]
ATGTCAGTTGACGTGAAATCAGCTCAATCCTCTAAGTCTGATTCCCTCCAGGTTGAACCCCGTCCAGGTGAGCGGGACAA
AGCTCTCAATTTGGTGCTTGGTCAGATTGAACGCAATTTTGGCAAGGGTTCGATCATGCGCTTGGGGGATGCCTCTCGGA
TGCGGGTGGAGACCTTCCCTACAGGGGCGCTCACCCTTGATCTTGCCCTTGGCGGTGGGTACCCGAAAGGACGAGTCGTG
GAGGTGTACGGCCCGGAGAGTTCCGGTAAAACCACCCTCACCCTGCATGCCATCGCCGAGGTGCAGCGTCGTGGTGGCGT
CGCGGCTTTTGTGGATGCCGAGCATGCGCTCGATCCGGTTTACGCAGCCTCTTTAGGAGTGGATATTGAGAACCTGCTGG
TATCGCAGCCGGACACGGGGGAGATGGCTCTGGAGATTGTCGACCAGCTTGTGCGCTCTGCCGCCGTTGATATCGTTGTT
GTGGATTCCGTTGCTGCGCTCACTCCCCGGTCTGAGATCGAAGGTGAGATGGGCGATTTGGCTGTGGGTAGCCAGGCCCG
TCTGATGAGTCAGGCGATGCGCAAAATCACTGGCAACATCGGCAAATCCGGCTGCACGGTCATTTTTCTCAACCAGTTGC
GTCTCAAGATAGGCGTCACTTACGGCAACCCGGAGACGACGACTGGTGGCAATGCTCTCAAGTTTTACGCCTCCGTACGT
CTCGACATCCGCCGTATTCAAACGCTCAAGCGTGGCACGGAGGAGTATGGAATTCGTGCCAAGGTGAAGGTGGCCAAAAA
CAAGGTAGCCCCTCCGTTTCGTATCGCTGAGTTCGACATTCTTTTTGGTCGTGGCATCAGTACCTTGGGTTGCTTGCTTG
ACCTAGCTGAAGAAACCGGTGTTGTCATCCGTAAGGGTGCCTGGTACAGCTATGAGGGCGACAATATCGGTCAGGGACGT
GACAACACGATTACTTGGCTTGAGCAGAATTCTGAAGCCAAGGAGCAGATTGAAGTTCTTGTGCGTCAGAAACTCACTGA
AGGGTCTGAGGTGACCGCCAATTCCATGCGTCCGTTGGCGGCGGCGGCCCGCACTGCGGCTAAAAAACCTGCCGTCAGCT
TGGCATCTGAAGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2CSD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.335

0.559
  recA Acinetobacter baumannii D1279779

63.975

84.96

0.544
  recA Pseudomonas stutzeri DSM 10701

63.354

84.96

0.538
  recA Glaesserella parasuis strain SC1401

58.651

89.974

0.528
  recA Ralstonia pseudosolanacearum GMI1000

63.987

82.058

0.525
  recA Vibrio cholerae strain A1552

61.491

84.96

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

84.96

0.522
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.697

0.522
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Neisseria gonorrhoeae strain FA1090

59.036

87.599

0.517
  recA Streptococcus mitis NCTC 12261

53.74

95.251

0.512
  recA Helicobacter pylori strain NCTC11637

57.101

89.182

0.509
  recA Helicobacter pylori 26695

57.101

89.182

0.509
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.807

0.509
  recA Streptococcus pneumoniae R6

56.677

88.918

0.504
  recA Streptococcus pneumoniae Rx1

56.677

88.918

0.504
  recA Streptococcus pneumoniae D39

56.677

88.918

0.504
  recA Streptococcus pneumoniae TIGR4

56.677

88.918

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.879

84.697

0.499
  recA Latilactobacillus sakei subsp. sakei 23K

58.75

84.433

0.496
  recA Streptococcus mitis SK321

56.287

88.127

0.496
  recA Lactococcus lactis subsp. cremoris KW2

55.821

88.391

0.493
  recA Streptococcus mutans UA159

56.923

85.752

0.488
  recA Streptococcus pyogenes NZ131

55.046

86.28

0.475
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.646

83.377

0.472