Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIC13_RS06760 Genome accession   NZ_CP138919
Coordinates   1090448..1091581 (+) Length   377 a.a.
NCBI ID   WP_413389266.1    Uniprot ID   -
Organism   Prochlorococcus marinus str. MIT 1012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085448..1096581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC13_RS06725 - 1085825..1086136 (-) 312 WP_413389261.1 50S ribosomal protein L23 -
  SIC13_RS06730 rplD 1086129..1086764 (-) 636 WP_413389262.1 50S ribosomal protein L4 -
  SIC13_RS06735 rplC 1086764..1087420 (-) 657 WP_413389263.1 50S ribosomal protein L3 -
  SIC13_RS06740 - 1087790..1088254 (+) 465 WP_413391745.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIC13_RS06745 - 1088267..1089289 (+) 1023 WP_413389264.1 LdpA C-terminal domain-containing domain -
  SIC13_RS06755 - 1089556..1090335 (+) 780 WP_413389265.1 HAD family hydrolase -
  SIC13_RS06760 recA 1090448..1091581 (+) 1134 WP_413389266.1 recombinase RecA Machinery gene
  SIC13_RS06765 - 1091603..1091842 (-) 240 WP_413389267.1 DUF2839 domain-containing protein -
  SIC13_RS06770 - 1091881..1093329 (-) 1449 WP_413389268.1 helicase -
  SIC13_RS06775 - 1093403..1094263 (+) 861 WP_413389269.1 prephenate/arogenate dehydrogenase -
  SIC13_RS06780 crtD 1094270..1095787 (-) 1518 WP_413389270.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40344.98 Da        Isoelectric Point: 7.3233

>NTDB_id=905906 SIC13_RS06760 WP_413389266.1 1090448..1091581(+) (recA) [Prochlorococcus marinus str. MIT 1012]
MSNEGKSLQSAESKKIDAKAGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMRPLAAAARHASTRPNLSQVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=905906 SIC13_RS06760 WP_413389266.1 1090448..1091581(+) (recA) [Prochlorococcus marinus str. MIT 1012]
ATGTCAAACGAAGGTAAGTCACTCCAATCAGCTGAATCTAAGAAAATAGACGCAAAAGCTGGAGAAAAAGAAAAAGCATT
AAGCTTAGTGGTTGGGCAAATAGAACGCAATTTCGGGAAAGGTTCGATCATGCGTCTTGGAGACGCCTCAAAAATGCGAG
TAGAAACCATATCTACGGGTGCTTTAACTCTTGATTTAGCTCTTGGTGGCGGCTACCCCAAAGGGCGTGTAATTGAAGTT
TATGGTCCCGAAAGTTCTGGGAAAACAACTCTGACATTACATGCCATAGCAGAGATCCAACGTAACGGCGGAGTTGCTGC
ATTTGTAGATGCAGAACATGCTCTTGATCCAGTCTATGCAGCTTCTCTTGGCGTTGATGTAGAGAATCTTCTCGTATCTC
AACCCGATACTGGAGAGATGGCATTAGAAATCGTTGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTTGTTGTTGAT
TCAGTCGCTGCACTTACACCCCGTTCAGAGATAGAAGGAGAAATGGGTGATCATTCAGTAGGAGCACAAGCTCGTCTAAT
GAGTCAAGCAATGAGAAAAATTACTGGAAACATTGGCAAGTCAGGTTGCACAGTAATTTTCTTGAATCAATTACGTCTGA
AAATTGGTATTACATATGGGAATCCAGAAACAACAACTGGTGGAAACGCTCTTAAATTTTATGCCTCTGTAAGATTAGAT
ATTCGTCGTATTCAAACGTTAAAGAGAGGAACTGAAGAATATGGAATTCGTGCAAAAGTGAAAGTCGCAAAAAACAAAGT
TGCACCTCCATTTCGAATAGCCGAATTTGATATTCTTTTTGGAAAAGGAATTAGTACTCTTGGTTGTCTTCTTGATTTGG
CCGATGAGACTAATGTTGTTACTCGTAAAGGAGCTTGGTATAGCTACGAAGGTGACAATATCGGGCAAGGACGAGACAAT
ACCATTACTTGGCTTGAACAGAATCCTGAATCAAAAGAAATAATTGAAAAATTAGTTAAAGAAAAATTAACTGAGGGCTC
AGAAGTAAGTGCTAACTCAATGAGACCATTAGCCGCAGCTGCTCGACATGCTTCAACACGACCAAACCTAAGCCAAGTTT
CAGCGAACGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.798

0.562
  recA Acinetobacter baumannii D1279779

64.286

85.411

0.549
  recA Neisseria gonorrhoeae MS11

59.767

90.981

0.544
  recA Neisseria gonorrhoeae MS11

59.767

90.981

0.544
  recA Neisseria gonorrhoeae strain FA1090

59.767

90.981

0.544
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Helicobacter pylori 26695

59.763

89.655

0.536
  recA Helicobacter pylori strain NCTC11637

59.763

89.655

0.536
  recA Streptococcus pneumoniae R6

55.866

94.96

0.531
  recA Streptococcus pneumoniae D39

55.866

94.96

0.531
  recA Streptococcus pneumoniae Rx1

55.866

94.96

0.531
  recA Streptococcus pneumoniae TIGR4

55.866

94.96

0.531
  recA Ralstonia pseudosolanacearum GMI1000

63.987

82.493

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

85.411

0.528
  recA Vibrio cholerae strain A1552

61.801

85.411

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

88.329

0.525
  recA Glaesserella parasuis strain SC1401

55.65

93.899

0.523
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.359

87.268

0.509
  recA Streptococcus mitis NCTC 12261

55.652

91.512

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

85.146

0.507
  recA Streptococcus mitis SK321

57.895

85.676

0.496
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.193

89.39

0.493
  recA Streptococcus mutans UA159

56.615

86.207

0.488
  recA Lactococcus lactis subsp. cremoris KW2

54.167

89.125

0.483
  recA Streptococcus pyogenes NZ131

55.046

86.737

0.477
  recA Latilactobacillus sakei subsp. sakei 23K

58.689

80.902

0.475