Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIC15_RS06850 Genome accession   NZ_CP138917
Coordinates   1500154..1501200 (+) Length   348 a.a.
NCBI ID   WP_412537333.1    Uniprot ID   -
Organism   Marinobacter sp. MIT932201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1495154..1506200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC15_RS06830 - 1495599..1496228 (+) 630 WP_174805050.1 LysE family translocator -
  SIC15_RS06835 fdxA 1496303..1496626 (-) 324 WP_008170541.1 ferredoxin FdxA -
  SIC15_RS06840 mutS 1496777..1499407 (-) 2631 WP_412537331.1 DNA mismatch repair protein MutS -
  SIC15_RS06845 pncC 1499489..1499989 (+) 501 WP_412537332.1 nicotinamide-nucleotide amidase -
  SIC15_RS06850 recA 1500154..1501200 (+) 1047 WP_412537333.1 recombinase RecA Machinery gene
  SIC15_RS06855 - 1501197..1501454 (-) 258 WP_412537334.1 hypothetical protein -
  SIC15_RS06860 - 1501688..1502158 (+) 471 WP_412537335.1 flavodoxin family protein -
  SIC15_RS06865 - 1502172..1502549 (-) 378 WP_069183868.1 PilZ domain-containing protein -
  SIC15_RS06870 - 1502767..1505175 (+) 2409 WP_412537336.1 AAA family ATPase -
  SIC15_RS06875 fixJ 1505215..1505841 (+) 627 WP_069183866.1 response regulator FixJ -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37466.05 Da        Isoelectric Point: 5.3316

>NTDB_id=905880 SIC15_RS06850 WP_412537333.1 1500154..1501200(+) (recA) [Marinobacter sp. MIT932201]
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRICEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFVDAEHALDPVYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSSAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENMDIANEIEA
KVRDKLMPKPVSKKDAEETPAEANGELL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=905880 SIC15_RS06850 WP_412537333.1 1500154..1501200(+) (recA) [Marinobacter sp. MIT932201]
ATGGAAGACAACCGCAAGAAAGCATTGAGCGCAGCACTTGGGCAGATCGAGCGCCAGTTCGGCAAGGGCGCCGTGATGAA
AATGGGTGACCAGCCCCGCGAAGCCATTCCTGCGGTCTCCACTGGTTCTCTGGGCCTGGACGTTGCCCTGGGTATTGGCG
GTCTGCCTTACGGTCGAATCTGTGAAATCTACGGCCCTGAGAGTTCCGGTAAAACCACACTTACCCTTCAGGTGATTGCC
GAGGCACAAAAGGCGGGCAAAACCTGTGCGTTTGTCGACGCCGAGCACGCCCTCGACCCGGTCTACGCCGAGAAGTTGGG
CGTGAATGTGGACGATCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCCCTGGAAATTGCCGACATGCTGGTTCGCT
CCAGCGCAGTTGACGTGATCATCGTTGACTCGGTTGCCGCCCTGACACCAAAAGCGGAAATCGAGGGCGAGATGGGCGAC
AGTCACGTTGGCCTGCAGGCGCGACTGATGTCTCAGGCGCTGCGGAAACTGACGGGTAACGTCAAGCATGCCAACTGCCT
GATGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAATTCTATTCCTCTGTACGCCTGGATATCCGCCGTATCGGTTCCGTTAAAGACGGCGACGAGGTGGTAGGTAACGAG
ACCCGCGTTAAAGTGGTCAAGAACAAGGTGTCCCCGCCATTCAAACAGGCCGAGTTCCAGATCATGTACGGCAAGGGCAT
TTACCACATGGCGGAAGTCCTGGATATGGGGGTCAAGGAAGGCTTTGTGGATAAATCCGGCGCCTGGTACGCCTACAACG
GCGACAAGATCGGCCAGGGCAAGGCGAACGCCTGCAAGTTCCTGGAGGAAAACATGGACATTGCTAACGAGATTGAAGCC
AAGGTTCGTGACAAGCTGATGCCCAAGCCGGTCTCGAAGAAAGACGCTGAAGAGACGCCCGCAGAAGCGAACGGCGAGCT
TCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.118

97.701

0.773
  recA Vibrio cholerae strain A1552

70.349

98.851

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.349

98.851

0.695
  recA Acinetobacter baylyi ADP1

70.76

98.276

0.695
  recA Glaesserella parasuis strain SC1401

70.058

98.851

0.693
  recA Ralstonia pseudosolanacearum GMI1000

70.588

97.701

0.69
  recA Acinetobacter baumannii D1279779

72.783

93.966

0.684
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.103

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.69

0.592
  recA Helicobacter pylori strain NCTC11637

60.831

96.839

0.589
  recA Helicobacter pylori 26695

60.831

96.839

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Streptococcus pneumoniae Rx1

55.874

100

0.56
  recA Streptococcus pneumoniae D39

55.874

100

0.56
  recA Streptococcus pneumoniae R6

55.874

100

0.56
  recA Streptococcus pneumoniae TIGR4

55.874

100

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

92.529

0.56
  recA Streptococcus mutans UA159

59.077

93.391

0.552
  recA Lactococcus lactis subsp. cremoris KW2

58.462

93.391

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

93.103

0.543
  recA Streptococcus pyogenes NZ131

57.317

94.253

0.54
  recA Streptococcus mitis NCTC 12261

57.895

92.816

0.537
  recA Streptococcus mitis SK321

57.585

92.816

0.534