Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIC19_RS03400 Genome accession   NZ_CP138916
Coordinates   723400..724452 (-) Length   350 a.a.
NCBI ID   WP_036204567.1    Uniprot ID   A0A1W6KCB3
Organism   Marinobacter sp. MIT930201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 718400..729452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC19_RS03375 fixJ 718784..719410 (-) 627 WP_007151863.1 response regulator FixJ -
  SIC19_RS03380 - 719470..721878 (-) 2409 WP_126810401.1 Lon protease family protein -
  SIC19_RS03385 - 722046..722330 (+) 285 WP_036204572.1 hypothetical protein -
  SIC19_RS03390 - 722508..722885 (+) 378 WP_036204571.1 PilZ domain-containing protein -
  SIC19_RS03395 - 722892..723362 (-) 471 WP_126810402.1 flavodoxin family protein -
  SIC19_RS03400 recA 723400..724452 (-) 1053 WP_036204567.1 recombinase RecA Machinery gene
  SIC19_RS03405 - 724598..725098 (-) 501 WP_036204565.1 CinA family protein -
  SIC19_RS03410 mutS 725181..727814 (+) 2634 WP_075195839.1 DNA mismatch repair protein MutS -
  SIC19_RS03415 fdxA 727952..728275 (+) 324 WP_007151871.1 ferredoxin FdxA -
  SIC19_RS03420 - 728343..729008 (-) 666 WP_036204562.1 LysE family translocator -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37629.24 Da        Isoelectric Point: 5.3483

>NTDB_id=905847 SIC19_RS03400 WP_036204567.1 723400..724452(-) (recA) [Marinobacter sp. MIT930201]
MEDNRKKALGAALSQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRICEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTGEQALEISDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLLIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYKGDKIGQGKANACKFLEENLEIANEIEA
AVRDKLMPKPAKKEEAAKEEATADANGELL

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=905847 SIC19_RS03400 WP_036204567.1 723400..724452(-) (recA) [Marinobacter sp. MIT930201]
ATGGAAGACAACCGCAAGAAAGCACTGGGCGCAGCACTGAGCCAGATCGAACGCCAGTTCGGCAAGGGCGCTGTCATGAA
GATGGGCGACCAGCCCAGGGAAGCGATCCCTGCGGTATCCACCGGTTCCCTGGGCCTGGATGTGGCGCTGGGAATAGGCG
GTCTGCCTTATGGTCGTATCTGTGAGATCTACGGCCCGGAAAGCTCTGGTAAAACCACGCTGACCCTGCAGGTGATTGCC
GAGGCCCAGAAGGCTGGAAAAACCTGTGCGTTTGTGGATGCGGAGCATGCCCTGGACCCGGTCTATGCCGAAAAACTGGG
CGTGAACGTGGATGAACTCCTGGTATCCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCTCTGACATGCTGGTACGCT
CCAACGCTGTTGACGTCATCATCGTGGACTCCGTGGCAGCGCTGACGCCCAAGGCCGAAATTGAAGGTGAGATGGGGGAC
AGCCATGTTGGTCTCCAGGCCCGCCTGATGTCCCAGGCGCTGCGTAAGCTGACGGGTAACGTCAAGCATGCCAACTGCCT
GCTGATCTTTATCAACCAGATCCGCATGAAAATTGGTGTGATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAACGCCC
TGAAATTCTACTCATCCGTTCGCCTGGACATTCGCCGCATCGGTGCTGTTAAAGATGGCGATGAAGTGGTGGGCAACGAA
ACCCGAGTGAAAGTGGTCAAGAACAAGGTATCTCCGCCGTTCAAGCAGGCCGAGTTCCAGATCATGTACGGCAAGGGCAT
CTACCACATGGCCGAAGTGCTCGATATGGGTGTGAAGGAAGGCTTCGTGGACAAGTCCGGCGCCTGGTACGCCTACAAGG
GCGACAAGATCGGCCAGGGCAAGGCCAATGCCTGCAAGTTTTTGGAAGAGAACCTTGAGATCGCCAATGAGATCGAAGCG
GCGGTGCGTGACAAGCTGATGCCCAAGCCGGCCAAGAAAGAAGAAGCGGCAAAGGAAGAGGCAACAGCAGACGCGAACGG
TGAGCTTCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6KCB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.902

98.857

0.78
  recA Acinetobacter baylyi ADP1

71.765

97.143

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.349

98.286

0.691
  recA Vibrio cholerae strain A1552

70.349

98.286

0.691
  recA Acinetobacter baumannii D1279779

72.783

93.429

0.68
  recA Glaesserella parasuis strain SC1401

72.561

93.714

0.68
  recA Ralstonia pseudosolanacearum GMI1000

69.617

96.857

0.674
  recA Neisseria gonorrhoeae MS11

70.988

92.571

0.657
  recA Neisseria gonorrhoeae MS11

70.988

92.571

0.657
  recA Neisseria gonorrhoeae strain FA1090

70.988

92.571

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

93.429

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.143

0.589
  recA Helicobacter pylori strain NCTC11637

60.831

96.286

0.586
  recA Helicobacter pylori 26695

60.237

96.286

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

91.714

0.577
  recA Streptococcus pneumoniae R6

55.22

100

0.574
  recA Streptococcus pneumoniae TIGR4

55.22

100

0.574
  recA Streptococcus pneumoniae Rx1

55.22

100

0.574
  recA Streptococcus pneumoniae D39

55.22

100

0.574
  recA Streptococcus mitis NCTC 12261

55.833

100

0.574
  recA Streptococcus mitis SK321

55.278

100

0.569
  recA Streptococcus mutans UA159

56.125

100

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

92.571

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

59.317

92

0.546
  recA Streptococcus pyogenes NZ131

56.707

93.714

0.531
  recA Lactococcus lactis subsp. cremoris KW2

56.966

92.286

0.526