Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIC18_RS05020 Genome accession   NZ_CP138915
Coordinates   980381..981529 (+) Length   382 a.a.
NCBI ID   WP_048347914.1    Uniprot ID   A0A0H4BAF2
Organism   Synechococcus sp. Cu2B8-bc1011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 975381..986529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC18_RS04995 - 976062..976523 (+) 462 WP_048347910.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIC18_RS05000 - 976532..977563 (+) 1032 WP_413430314.1 LdpA C-terminal domain-containing domain -
  SIC18_RS05005 - 977630..979267 (+) 1638 WP_413430315.1 AAA family ATPase -
  SIC18_RS05015 - 979463..980227 (+) 765 WP_048347913.1 HAD family hydrolase -
  SIC18_RS05020 recA 980381..981529 (+) 1149 WP_048347914.1 recombinase RecA Machinery gene
  SIC18_RS05025 - 981526..981876 (-) 351 WP_413430316.1 DUF1815 family protein -
  SIC18_RS05030 - 981968..982207 (-) 240 WP_048348460.1 DUF2839 domain-containing protein -
  SIC18_RS05035 - 982249..983703 (-) 1455 WP_413430317.1 helicase -
  SIC18_RS05040 - 983788..984666 (+) 879 WP_048348461.1 prephenate/arogenate dehydrogenase -
  SIC18_RS05045 crtD 984676..986205 (-) 1530 WP_413430318.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40400.06 Da        Isoelectric Point: 7.1448

>NTDB_id=905838 SIC18_RS05020 WP_048347914.1 980381..981529(+) (recA) [Synechococcus sp. Cu2B8-bc1011]
MPADVKAAQSSAGDSRPGERDKALDLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKDAIEVLVRQKLTEGSEVTSNSMRPLAAAARSAAAKPSAKTADTVKKSVADGAA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=905838 SIC18_RS05020 WP_048347914.1 980381..981529(+) (recA) [Synechococcus sp. Cu2B8-bc1011]
ATGCCAGCCGACGTGAAAGCCGCTCAATCCTCTGCAGGAGATTCCCGTCCGGGCGAGAGGGACAAGGCCTTAGACCTTGT
GCTCGGTCAAATCGAGCGAAATTTTGGAAAGGGCTCGATCATGCGTTTGGGGGATGCCTCCCGAATGCGGGTGGAAACCA
TCTCTACGGGGGCCCTCACTCTTGATCTCGCCCTTGGCGGCGGGTATCCCAAGGGGCGAGTGGTTGAGGTCTACGGGCCT
GAGAGTTCAGGTAAGACCACGCTCACCCTTCATGCCATCGCTGAGGTCCAAAAGCGTGGAGGAGTGGCGGCATTCGTTGA
TGCTGAGCATGCCCTTGATCCTGTTTATGCGGCCTCTCTCGGCGTCGATATCGAGAATCTGCTGGTCTCCCAGCCGGATA
CGGGTGAGATGGCGCTTGAGATCGTCGATCAGCTGGTTCGTTCTGCTGCGGTCGACATTGTGGTGGTCGACTCTGTTGCT
GCGCTGACGCCAAGAGCGGAGATTGAGGGAGAGATGGGGGATTTGGCTGTTGGAGCCCAAGCTCGCTTGATGAGCCAGGC
GATGCGCAAGATCACTGGCAACATTGGTAAGTCCGGTTGCACGGTGATTTTCCTGAACCAGCTTCGACTGAAGATCGGAG
TGACCTATGGCAATCCGGAGACCACAACTGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTACGGCTTGATATTCGTCGG
ATCCAAACCCTCAAGCGTGGCACTGAGGAGTACGGCATTAGGGCGAAGGTGAAAGTGGCGAAAAATAAGGTGGCACCTCC
GTTTCGCATTGCTGAGTTCGACATTTTGTTTGGGCGTGGGATCAGCACACTCGGCTGTGTTCTCGACTTGGCCGAGGAAA
CCGGTGTGGTGACGCGCAAAGGGGCCTGGTACAGCTATGAGGGCGACAACATTGGCCAAGGCCGTGACAACACCATCGGT
TGGCTCGAGCAAAACCCTGAGGCCAAGGACGCCATCGAAGTGCTGGTGCGTCAAAAGTTGACCGAAGGATCGGAGGTGAC
GTCGAATTCGATGCGCCCTTTGGCTGCTGCAGCCCGCTCAGCTGCTGCCAAGCCTTCGGCTAAAACTGCTGACACAGTTA
AAAAGTCAGTCGCTGATGGAGCCGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4BAF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.653

86.649

0.56
  recA Acinetobacter baumannii D1279779

64.286

84.293

0.542
  recA Pseudomonas stutzeri DSM 10701

64.286

84.293

0.542
  recA Ralstonia pseudosolanacearum GMI1000

64.952

81.414

0.529
  recA Neisseria gonorrhoeae strain FA1090

60.542

86.911

0.526
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Glaesserella parasuis strain SC1401

61.656

85.34

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

84.293

0.524
  recA Vibrio cholerae strain A1552

62.112

84.293

0.524
  recA Bacillus subtilis subsp. subtilis str. 168

60.241

86.911

0.524
  recA Helicobacter pylori 26695

58.58

88.482

0.518
  recA Helicobacter pylori strain NCTC11637

58.58

88.482

0.518
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

86.126

0.51
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.436

84.031

0.508
  recA Streptococcus pneumoniae D39

56.805

88.482

0.503
  recA Streptococcus pneumoniae Rx1

56.805

88.482

0.503
  recA Streptococcus pneumoniae R6

56.805

88.482

0.503
  recA Streptococcus pneumoniae TIGR4

56.805

88.482

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

60

83.77

0.503
  recA Streptococcus mitis NCTC 12261

56.509

88.482

0.5
  recA Streptococcus mitis SK321

55.523

90.052

0.5
  recA Streptococcus mutans UA159

58.462

85.079

0.497
  recA Lactococcus lactis subsp. cremoris KW2

56.716

87.696

0.497
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.689

87.435

0.487
  recA Streptococcus pyogenes NZ131

56.575

85.602

0.484