Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Cthiooxydans_RS25655 Genome accession   NZ_AP025193
Coordinates   5560556..5561665 (-) Length   369 a.a.
NCBI ID   WP_003072158.1    Uniprot ID   A0A5S4SP92
Organism   Comamonas thiooxydans strain NR4028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5555556..5566665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cthiooxydans_RS25635 (Cthiooxydans_49880) - 5556543..5557886 (+) 1344 WP_087863872.1 MFS transporter -
  Cthiooxydans_RS25640 (Cthiooxydans_49890) yddG 5558167..5559081 (+) 915 WP_087863873.1 aromatic amino acid DMT transporter YddG -
  Cthiooxydans_RS25645 (Cthiooxydans_49900) - 5559106..5559840 (-) 735 WP_087863874.1 hypothetical protein -
  Cthiooxydans_RS25650 (Cthiooxydans_49910) recX 5559900..5560370 (-) 471 WP_046460391.1 recombination regulator RecX -
  Cthiooxydans_RS25655 (Cthiooxydans_49920) recA 5560556..5561665 (-) 1110 WP_003072158.1 recombinase RecA Machinery gene
  Cthiooxydans_RS25660 (Cthiooxydans_49930) - 5561804..5562295 (+) 492 WP_012840368.1 MarR family winged helix-turn-helix transcriptional regulator -
  Cthiooxydans_RS25665 (Cthiooxydans_49940) - 5562422..5563099 (+) 678 WP_003064757.1 response regulator -
  Cthiooxydans_RS25670 (Cthiooxydans_49950) - 5563211..5564653 (+) 1443 WP_003064759.1 sensor histidine kinase -
  Cthiooxydans_RS25675 (Cthiooxydans_49960) - 5564873..5565850 (+) 978 WP_003064761.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39089.94 Da        Isoelectric Point: 5.3884

>NTDB_id=90414 Cthiooxydans_RS25655 WP_003072158.1 5560556..5561665(-) (recA) [Comamonas thiooxydans strain NR4028]
MNAIAKTNDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRE
NPALAIEIENKVRESLGIKLLPVDGAAAAEAKPAKGGKGKVDKDGVIEG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=90414 Cthiooxydans_RS25655 WP_003072158.1 5560556..5561665(-) (recA) [Comamonas thiooxydans strain NR4028]
ATGAACGCCATCGCCAAGACCAACGACGCCAACAGCGAAAAAGCCAAAGCCCTGGCTGCAGCCCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGAAGCTCGGTGAAGGTGAGGCCATCGAAGACATTCAGGTCGTTTCCACCGGCTCCC
TGGGTCTGGACATCGCGCTGGGCGTAGGTGGTCTGCCCCGTGGCCGTGTGATCGAAATCTACGGTCCCGAATCCTCGGGC
AAGACCACGCTGACGCTGCAGGTCATTGCCGAGATGCAAAAGCAGGGCGGCACCTGCGCCTTTATCGACGCCGAACATGC
GCTGGACACCAGCTACGCCCAGAAGCTGGGCGTGAACCTCAGCGACGTGCTGATCAGCCAGCCCGACACCGGTGAGCAGG
CTCTGGAAATCTGCGACAGTCTGGTGCGTTCGGGGGCCGTGGACCTGATCGTCATCGACTCGGTGGCCGCATTGACGCCC
AAGGCCGAAATCGAAGGCGAGATGGGCGATGCCCTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCGCAAGCT
GACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTATGCCTCCGTGCGTCTGGATATCCGCCGCACCGGCACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTCGTGAAGAACAAGGTCTCGCCCCCCTTCAAGACGGC
AGAGTTCGACATCCTGTTTGGCGAAGGCATCAGCCGCGAAGGCGAGATTCTGGACATGGGCGTGAACGCCAAGATTCTGG
AAAAGAGCGGTGCCTGGTATGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGTGAATTCCTGCGCGAG
AACCCCGCGCTGGCCATTGAGATCGAAAACAAGGTGCGCGAGAGCCTGGGCATCAAGCTGCTGCCCGTGGACGGTGCTGC
GGCTGCCGAGGCCAAGCCTGCCAAGGGCGGCAAGGGCAAGGTGGACAAGGACGGCGTGATTGAAGGTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SP92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.076

85.095

0.715
  recA Neisseria gonorrhoeae strain FA1090

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Pseudomonas stutzeri DSM 10701

71.472

88.347

0.631
  recA Glaesserella parasuis strain SC1401

71.296

87.805

0.626
  recA Acinetobacter baylyi ADP1

69.939

88.347

0.618
  recA Acinetobacter baumannii D1279779

69.939

88.347

0.618
  recA Vibrio cholerae strain A1552

69.939

88.347

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.939

88.347

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.374

92.683

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

89.431

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

88.618

0.572
  recA Helicobacter pylori strain NCTC11637

64.329

88.889

0.572
  recA Helicobacter pylori 26695

64.329

88.889

0.572
  recA Streptococcus mutans UA159

57.5

97.561

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.162

90.244

0.561
  recA Streptococcus mitis SK321

59.42

93.496

0.556
  recA Lactococcus lactis subsp. cremoris KW2

60.714

91.057

0.553
  recA Streptococcus mitis NCTC 12261

59.13

93.496

0.553
  recA Streptococcus pneumoniae Rx1

59.184

92.954

0.55
  recA Streptococcus pneumoniae D39

59.184

92.954

0.55
  recA Streptococcus pneumoniae R6

59.184

92.954

0.55
  recA Streptococcus pneumoniae TIGR4

59.184

92.954

0.55
  recA Streptococcus pyogenes NZ131

60.597

90.786

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

89.431

0.537

Multiple sequence alignment