Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SHJ99_RS05560 Genome accession   NZ_CP138633
Coordinates   1285343..1286491 (-) Length   382 a.a.
NCBI ID   WP_004217592.1    Uniprot ID   A0A806FHS3
Organism   Bifidobacterium animalis strain B01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1280343..1291491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJ99_RS05545 (SHJ99_05545) hpf 1283246..1283932 (-) 687 WP_004217596.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SHJ99_RS05555 (SHJ99_05555) - 1284604..1285233 (-) 630 WP_004217594.1 regulatory protein RecX -
  SHJ99_RS05560 (SHJ99_05560) recA 1285343..1286491 (-) 1149 WP_004217592.1 recombinase RecA Machinery gene
  SHJ99_RS05565 (SHJ99_05565) - 1286763..1287002 (-) 240 WP_004269152.1 DUF3046 domain-containing protein -
  SHJ99_RS05570 (SHJ99_05570) - 1287144..1287659 (-) 516 WP_004217589.1 helix-turn-helix domain-containing protein -
  SHJ99_RS05575 (SHJ99_05575) - 1287682..1288308 (-) 627 WP_004217587.1 CinA family protein -
  SHJ99_RS05580 (SHJ99_05580) pgsA 1288491..1289144 (-) 654 WP_012619879.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41008.26 Da        Isoelectric Point: 4.7956

>NTDB_id=903813 SHJ99_RS05560 WP_004217592.1 1285343..1286491(-) (recA) [Bifidobacterium animalis strain B01]
MAARSKSSVKETEKTEAPGVDKKREDALNSALAQVEKQFGKGSAMRLGDRPEQDIEVIPTGSLALDTALGIGGLPRGRIV
EIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIV
IDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVR
MDIRRIQTLKDKDEPIGNRTRVKVVKNKMAPPFKTAEFDMLYGQGISQEGSILDMALETDVVRKSGSWFTYNGEQLGQGR
ENVRKFLIDNPKLAEEISTQVKVKTGLISTDDQFGVDGTEEENGESITTSESNAEAQTSAEA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=903813 SHJ99_RS05560 WP_004217592.1 1285343..1286491(-) (recA) [Bifidobacterium animalis strain B01]
ATGGCTGCACGAAGCAAGTCCTCCGTCAAGGAGACGGAGAAGACCGAGGCGCCTGGCGTCGACAAGAAGCGCGAGGATGC
GCTCAATTCGGCGTTGGCCCAAGTGGAGAAGCAGTTCGGCAAGGGCTCTGCCATGCGTTTGGGAGATAGGCCGGAACAGG
ACATCGAGGTGATTCCCACCGGTTCGTTGGCCCTCGACACTGCTTTGGGCATCGGCGGTCTGCCCCGTGGACGCATTGTG
GAGATCTATGGCCCGGAGTCGTCGGGCAAGACCACGCTGGCGTTGCATGTGGTCGCCAACGCGCAGAAGAACGGTGGCGT
GGCCGCGTTCATCGACGCCGAGCACGCCCTTGATCCCGTGTATGCGCGCCACCTGGGCGTCGATACCGATTCGCTCATCG
TTTCGCAGCCGGACAACGGGGAGCAGGCGCTGGAAATCGCCGACATGCTCATTCGTTCCGGGGCTCTTGACGTCATCGTC
ATCGATTCGGTGGCGGCGTTGGTGCCGAAGGCCGAGATCGAAGGCGATATGGGTGACAGCCACGTCGGTCTGCAGGCAAG
GCTCATGAGCCAGGCGCTGCGCAAGATGACCGGTGCGCTGGCACAGGCGAACACGACGGCCATCTTCATCAACCAGTTGC
GAGAGAAGATCGGCGTATTCTTCGGAAGCCCGGAGACGACCACCGGCGGCAAGGCGTTGAAGTTCTATGCATCCGTCCGC
ATGGACATCCGCCGCATCCAGACGCTGAAAGACAAGGACGAGCCGATTGGCAACCGCACTCGTGTCAAGGTGGTCAAGAA
CAAGATGGCACCTCCATTCAAGACCGCCGAGTTCGACATGCTCTATGGGCAGGGCATCTCGCAGGAAGGGTCGATTCTCG
ACATGGCGTTGGAGACCGACGTGGTGAGGAAGTCCGGTTCTTGGTTCACCTACAACGGTGAACAGCTGGGGCAGGGCCGT
GAGAACGTGCGTAAGTTCCTCATCGACAATCCGAAGCTCGCCGAGGAGATCTCCACTCAGGTGAAGGTCAAGACCGGGCT
CATCTCCACCGACGACCAGTTCGGCGTCGACGGCACCGAGGAGGAGAACGGTGAGTCTATAACCACCAGTGAGTCGAATG
CGGAGGCTCAGACGAGTGCTGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A806FHS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.974

89.791

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.095

88.22

0.565
  recA Glaesserella parasuis strain SC1401

62.573

89.529

0.56
  recA Streptococcus mitis NCTC 12261

58.564

94.764

0.555
  recA Pseudomonas stutzeri DSM 10701

63.855

86.911

0.555
  recA Acinetobacter baumannii D1279779

65.325

84.555

0.552
  recA Bacillus subtilis subsp. subtilis str. 168

65.123

84.817

0.552
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.519

90.838

0.55
  recA Streptococcus mutans UA159

58.708

93.194

0.547
  recA Ralstonia pseudosolanacearum GMI1000

66.773

81.937

0.547
  recA Streptococcus mitis SK321

62.424

86.387

0.539
  recA Helicobacter pylori strain NCTC11637

62.5

85.864

0.537
  recA Helicobacter pylori 26695

62.5

85.864

0.537
  recA Neisseria gonorrhoeae strain FA1090

65.079

82.461

0.537
  recA Neisseria gonorrhoeae MS11

65.079

82.461

0.537
  recA Neisseria gonorrhoeae MS11

65.079

82.461

0.537
  recA Streptococcus pyogenes NZ131

61.89

85.864

0.531
  recA Vibrio cholerae strain A1552

62.848

84.555

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

84.555

0.531
  recA Streptococcus pneumoniae R6

60.778

87.435

0.531
  recA Streptococcus pneumoniae Rx1

60.778

87.435

0.531
  recA Streptococcus pneumoniae D39

60.778

87.435

0.531
  recA Streptococcus pneumoniae TIGR4

60.778

87.435

0.531
  recA Lactococcus lactis subsp. cremoris KW2

57.386

92.147

0.529
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

85.079

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.215

86.649

0.513