Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RZE77_RS27130 Genome accession   NZ_CP138513
Coordinates   5776040..5777158 (-) Length   372 a.a.
NCBI ID   WP_319440053.1    Uniprot ID   -
Organism   Variovorax paradoxus strain SPNA7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5771040..5782158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE77_RS27105 (RZE77_27105) - 5771519..5772208 (-) 690 WP_319440049.1 TerC family protein -
  RZE77_RS27110 (RZE77_27110) sucD 5772309..5773202 (-) 894 WP_015867930.1 succinate--CoA ligase subunit alpha -
  RZE77_RS27115 (RZE77_27115) sucC 5773213..5774379 (-) 1167 WP_319440050.1 ADP-forming succinate--CoA ligase subunit beta -
  RZE77_RS27120 (RZE77_27120) argC 5774586..5775509 (+) 924 WP_319440051.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  RZE77_RS27125 (RZE77_27125) recX 5775560..5776012 (-) 453 WP_319440052.1 recombination regulator RecX -
  RZE77_RS27130 (RZE77_27130) recA 5776040..5777158 (-) 1119 WP_319440053.1 recombinase RecA Machinery gene
  RZE77_RS27135 (RZE77_27135) - 5777305..5777790 (+) 486 WP_319440054.1 MarR family winged helix-turn-helix transcriptional regulator -
  RZE77_RS27140 (RZE77_27140) - 5777856..5778527 (+) 672 WP_015867936.1 response regulator -
  RZE77_RS27145 (RZE77_27145) - 5778573..5780018 (+) 1446 WP_319440055.1 sensor histidine kinase -
  RZE77_RS27150 (RZE77_27150) - 5780040..5780228 (-) 189 WP_124959151.1 sporulation protein -
  RZE77_RS27155 (RZE77_27155) - 5780240..5781067 (-) 828 WP_319440056.1 biotin--[acetyl-CoA-carboxylase] ligase -
  RZE77_RS27160 (RZE77_27160) - 5781070..5781726 (-) 657 WP_319440057.1 SET domain-containing protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39499.37 Da        Isoelectric Point: 5.3952

>NTDB_id=903277 RZE77_RS27130 WP_319440053.1 5776040..5777158(-) (recA) [Variovorax paradoxus strain SPNA7]
MDALVKGTSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREF
LRENPGLSREIENKVRESLGIPLLAADASAPATEKAEKPAKAAKADKADKGE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=903277 RZE77_RS27130 WP_319440053.1 5776040..5777158(-) (recA) [Variovorax paradoxus strain SPNA7]
ATGGACGCACTCGTCAAAGGCACCAGCATCTCGGTCGCAGGCAGCGAAAAGGCCAAGGCGCTGCAGGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTTGGCGAGGGCGAGGCGCTCGAAGACGTCCAGGTGGTCTCCA
CCGGTTCGCTCGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAGATCTACGGCCCTGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAGATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCATGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTCATCAGCCAGCCCGACACCG
GCGAGCAGGCCCTTGAAATCGTCGATTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCC
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCTCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGAATGCCA
AGATCCTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGGGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGGCGGCCGA
TGCCAGCGCTCCCGCCACGGAAAAGGCCGAGAAGCCCGCCAAGGCGGCCAAGGCCGACAAAGCCGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.098

88.172

0.715
  recA Pseudomonas stutzeri DSM 10701

69.653

93.011

0.648
  recA Acinetobacter baylyi ADP1

70.262

92.204

0.648
  recA Acinetobacter baumannii D1279779

69.388

92.204

0.64
  recA Neisseria gonorrhoeae MS11

68.895

92.473

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.895

92.473

0.637
  recA Neisseria gonorrhoeae MS11

68.895

92.473

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.935

90.86

0.626
  recA Vibrio cholerae strain A1552

68.935

90.86

0.626
  recA Glaesserella parasuis strain SC1401

70.988

87.097

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.098

87.634

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.985

90.591

0.589
  recA Helicobacter pylori strain NCTC11637

65.644

87.634

0.575
  recA Helicobacter pylori 26695

65.644

87.634

0.575
  recA Streptococcus mutans UA159

59.003

97.043

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.903

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

88.71

0.559
  recA Streptococcus pyogenes NZ131

62.236

88.978

0.554
  recA Streptococcus pneumoniae D39

61.446

89.247

0.548
  recA Streptococcus pneumoniae R6

61.446

89.247

0.548
  recA Streptococcus pneumoniae TIGR4

61.446

89.247

0.548
  recA Lactococcus lactis subsp. cremoris KW2

61.446

89.247

0.548
  recA Streptococcus pneumoniae Rx1

61.446

89.247

0.548
  recA Streptococcus mitis SK321

61.145

89.247

0.546
  recA Streptococcus mitis NCTC 12261

61.145

89.247

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

86.29

0.53