Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SGW13_RS06360 Genome accession   NZ_CP138502
Coordinates   1257411..1258466 (-) Length   351 a.a.
NCBI ID   WP_002832084.1    Uniprot ID   A0AAN5Y6Q7
Organism   Pediococcus acidilactici strain AF2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1252411..1263466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW13_RS06350 (SGW13_06350) mutS 1252774..1255458 (-) 2685 WP_323052008.1 DNA mismatch repair protein MutS -
  SGW13_RS06355 (SGW13_06355) rny 1255583..1257142 (-) 1560 WP_002832083.1 ribonuclease Y -
  SGW13_RS06360 (SGW13_06360) recA 1257411..1258466 (-) 1056 WP_002832084.1 recombinase RecA Machinery gene
  SGW13_RS06365 (SGW13_06365) - 1258637..1259878 (-) 1242 WP_005917638.1 competence/damage-inducible protein A -
  SGW13_RS06370 (SGW13_06370) pgsA 1260016..1260597 (-) 582 WP_004165430.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SGW13_RS06375 (SGW13_06375) - 1260610..1261488 (-) 879 WP_065124717.1 helix-turn-helix domain-containing protein -
  SGW13_RS06380 (SGW13_06380) ymfI 1261531..1262256 (-) 726 WP_008841147.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37787.00 Da        Isoelectric Point: 4.9200

>NTDB_id=903203 SGW13_RS06360 WP_002832084.1 1257411..1258466(-) (recA) [Pediococcus acidilactici strain AF2019]
MADERKEALNKALKKIEKNFGKGSIMRMGDAVDTQISTIPSGSLALDDALGVGGYPKGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENAMDPAYATNLGVNIDDLLLSQPDTGEEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGD
AHVGLQARMMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGSDVIGNR
VKIKVVKNKVAPPFKRAEVDIMYGEGISQTGEMIDMAVEKDIVGKSGSWYSYGEERIGQGRENAKKYMEDHPDVRAEVLA
KVREAYGMVADPASEVKEDSKQDDQAELDLK

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=903203 SGW13_RS06360 WP_002832084.1 1257411..1258466(-) (recA) [Pediococcus acidilactici strain AF2019]
GTGGCAGATGAAAGAAAAGAAGCTTTGAATAAAGCTCTTAAAAAAATTGAAAAAAACTTTGGAAAAGGTTCCATCATGCG
GATGGGGGATGCGGTTGATACCCAAATTTCCACCATTCCAAGCGGTTCGCTAGCGCTAGACGATGCGTTAGGTGTAGGCG
GTTATCCTAAAGGACGGATTGTTGAGATCTACGGTCCTGAAAGTTCAGGGAAAACTACGGTTGCGCTTCACGCGGTAGCC
GAAGTTCAAAAGCGAGGCGGAACGGCTGCGTACATTGACGCGGAAAATGCAATGGATCCAGCTTATGCAACTAATCTGGG
AGTTAACATTGACGACCTCTTACTTTCCCAACCAGATACTGGGGAAGAAGGTTTGGCAATCGCAGACGCTTTAGTTTCAA
GTGGAGCCATTGACTTAGTAGTTATTGATTCGGTTGCGGCCTTAGTACCGCGTGCTGAAATCGACGGTGAAATGGGCGAT
GCTCACGTTGGTTTACAAGCACGGATGATGTCTCAAGCGCTACGGAAACTTTCGGGTTCAATTAATAAAACTAAAACAAT
CGCCCTTTTCATTAACCAAATTCGTGAAAAGGTTGGAATTATGTTTGGAAATCCCGAAACCACTCCGGGTGGCCGGGCTT
TGAAGTTCTACGCAACCATTCGTTTGGAAGTTCGGCGTGCTGAGCAAATCAAAGACGGTTCTGACGTAATTGGTAACCGG
GTTAAGATTAAAGTAGTTAAAAATAAGGTCGCACCTCCGTTTAAGCGGGCAGAAGTCGATATTATGTATGGTGAAGGAAT
TTCGCAAACGGGCGAAATGATTGATATGGCCGTAGAAAAAGACATCGTTGGCAAGAGCGGTTCCTGGTACTCATATGGTG
AAGAACGAATTGGACAGGGTCGTGAAAATGCTAAGAAGTACATGGAAGATCACCCAGATGTCCGTGCCGAGGTATTGGCT
AAGGTTCGAGAAGCGTACGGGATGGTAGCTGATCCAGCTAGTGAAGTTAAGGAAGATAGCAAACAAGACGACCAAGCTGA
ATTAGACTTGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.05

97.721

0.792
  recA Bacillus subtilis subsp. subtilis str. 168

73.171

93.447

0.684
  recA Streptococcus mitis SK321

67.714

99.715

0.675
  recA Streptococcus mitis NCTC 12261

67.429

99.715

0.672
  recA Streptococcus mutans UA159

65.826

100

0.67
  recA Streptococcus pneumoniae TIGR4

67.341

98.575

0.664
  recA Streptococcus pneumoniae Rx1

67.341

98.575

0.664
  recA Streptococcus pneumoniae D39

67.341

98.575

0.664
  recA Streptococcus pneumoniae R6

67.341

98.575

0.664
  recA Lactococcus lactis subsp. cremoris KW2

69.139

96.011

0.664
  recA Streptococcus pyogenes NZ131

69.184

94.302

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.89

93.447

0.578
  recA Ralstonia pseudosolanacearum GMI1000

61.28

93.447

0.573
  recA Vibrio cholerae strain A1552

56.286

99.715

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.286

99.715

0.561
  recA Neisseria gonorrhoeae MS11

59.878

93.732

0.561
  recA Neisseria gonorrhoeae MS11

59.878

93.732

0.561
  recA Neisseria gonorrhoeae strain FA1090

59.878

93.732

0.561
  recA Acinetobacter baylyi ADP1

58.951

92.308

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

93.732

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.41

93.162

0.544
  recA Pseudomonas stutzeri DSM 10701

59.133

92.023

0.544
  recA Glaesserella parasuis strain SC1401

54.31

99.145

0.538
  recA Acinetobacter baumannii D1279779

58.025

92.308

0.536
  recA Helicobacter pylori strain NCTC11637

57.669

92.877

0.536
  recA Helicobacter pylori 26695

57.669

92.877

0.536