Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RZE79_RS29950 Genome accession   NZ_CP138496
Coordinates   6367902..6369014 (-) Length   370 a.a.
NCBI ID   WP_319358096.1    Uniprot ID   -
Organism   Variovorax sp. EBFNA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6362902..6374014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE79_RS29920 (RZE79_29920) argC 6363571..6364494 (+) 924 WP_319358089.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  RZE79_RS29925 (RZE79_29925) - 6364578..6365528 (-) 951 WP_319358090.1 bestrophin family ion channel -
  RZE79_RS29930 (RZE79_29930) - 6365662..6366396 (-) 735 WP_319358091.1 hypothetical protein -
  RZE79_RS29935 (RZE79_29935) yiaA 6366510..6366950 (+) 441 WP_319358092.1 inner membrane protein YiaA -
  RZE79_RS29940 (RZE79_29940) - 6366963..6367403 (-) 441 WP_153281472.1 SRPBCC family protein -
  RZE79_RS29945 (RZE79_29945) recX 6367372..6367845 (-) 474 WP_319358094.1 recombination regulator RecX -
  RZE79_RS29950 (RZE79_29950) recA 6367902..6369014 (-) 1113 WP_319358096.1 recombinase RecA Machinery gene
  RZE79_RS29955 (RZE79_29955) - 6369161..6369646 (+) 486 WP_319358097.1 helix-turn-helix domain-containing protein -
  RZE79_RS29960 (RZE79_29960) - 6369712..6370386 (+) 675 WP_056575150.1 response regulator transcription factor -
  RZE79_RS29965 (RZE79_29965) - 6370413..6371366 (-) 954 WP_319358099.1 hypothetical protein -
  RZE79_RS29970 (RZE79_29970) - 6371509..6372951 (+) 1443 WP_319358100.1 sensor histidine kinase N-terminal domain-containing protein -
  RZE79_RS29975 (RZE79_29975) - 6372948..6373685 (+) 738 WP_319358102.1 HEAT repeat domain-containing protein -
  RZE79_RS29980 (RZE79_29980) - 6373691..6373879 (-) 189 WP_192194181.1 sporulation protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39316.11 Da        Isoelectric Point: 5.2193

>NTDB_id=903168 RZE79_RS29950 WP_319358096.1 6367902..6369014(-) (recA) [Variovorax sp. EBFNA2]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE
SSGKTTLTLQVIASMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIIDKSGAWYAYNGEKIGQGRDNAREF
LRENPDLSREIENKVRESLGIPLLAADAGSEPEKAEKPAKASKADKAAAE

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=903168 RZE79_RS29950 WP_319358096.1 6367902..6369014(-) (recA) [Variovorax sp. EBFNA2]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAAGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTCGAAGACATCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCGTTGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTGATCGCCTCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAGCACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGTGCTGTCGACCTGATCGTGGTCGACTCGGTCGCTGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCACCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAAACCAAGGTGAAGGTGGTAAAGAACAAGGTGAGCCCGCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTCACGGCCA
AGATCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGACCTGTCGCGTGAGATCGAGAACAAGGTGCGCGAATCGCTGGGCATTCCGCTGCTCGCAGCCGA
TGCCGGCAGCGAACCCGAGAAGGCCGAGAAGCCCGCCAAGGCCTCGAAGGCCGACAAGGCGGCAGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.232

92.162

0.749
  recA Neisseria gonorrhoeae strain FA1090

68.986

93.243

0.643
  recA Neisseria gonorrhoeae MS11

68.986

93.243

0.643
  recA Neisseria gonorrhoeae MS11

68.986

93.243

0.643
  recA Pseudomonas stutzeri DSM 10701

72.086

88.108

0.635
  recA Acinetobacter baylyi ADP1

72.086

88.108

0.635
  recA Glaesserella parasuis strain SC1401

71.914

87.568

0.63
  recA Acinetobacter baumannii D1279779

70.859

88.108

0.624
  recA Vibrio cholerae strain A1552

69.605

88.919

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.605

88.919

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.217

93.243

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.767

89.459

0.597
  recA Helicobacter pylori 26695

64.939

88.649

0.576
  recA Helicobacter pylori strain NCTC11637

64.939

88.649

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

88.378

0.573
  recA Streptococcus mutans UA159

59.718

95.946

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

63.333

89.189

0.565
  recA Streptococcus mitis SK321

59.249

93.514

0.554
  recA Lactococcus lactis subsp. cremoris KW2

61.934

89.459

0.554
  recA Streptococcus pyogenes NZ131

62.006

88.919

0.551
  recA Streptococcus pneumoniae Rx1

61.027

89.459

0.546
  recA Streptococcus pneumoniae D39

61.027

89.459

0.546
  recA Streptococcus pneumoniae R6

61.027

89.459

0.546
  recA Streptococcus pneumoniae TIGR4

61.027

89.459

0.546
  recA Streptococcus mitis NCTC 12261

60.725

89.459

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

86.757

0.532