Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RQP18_RS05315 Genome accession   NZ_CP138333
Coordinates   1074725..1075780 (+) Length   351 a.a.
NCBI ID   WP_342389118.1    Uniprot ID   -
Organism   Salinicoccus sp. Bachu38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069725..1080780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP18_RS05290 (RQP18_05255) yfmH 1070346..1071629 (+) 1284 WP_342389114.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RQP18_RS05295 (RQP18_05260) - 1071622..1072311 (+) 690 WP_342389115.1 SDR family oxidoreductase -
  RQP18_RS05300 (RQP18_05265) - 1072335..1073138 (+) 804 WP_031548640.1 DUF3388 domain-containing protein -
  RQP18_RS05305 (RQP18_05270) - 1073148..1073963 (+) 816 WP_342389116.1 RodZ domain-containing protein -
  RQP18_RS05310 (RQP18_05275) pgsA 1073968..1074555 (+) 588 WP_342389117.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RQP18_RS05315 (RQP18_05280) recA 1074725..1075780 (+) 1056 WP_342389118.1 recombinase RecA Machinery gene
  RQP18_RS05320 (RQP18_05285) rny 1075944..1077497 (+) 1554 WP_373446161.1 ribonuclease Y -
  RQP18_RS05325 (RQP18_05290) - 1077542..1077754 (-) 213 WP_342389120.1 hypothetical protein -
  RQP18_RS05330 (RQP18_05295) - 1077843..1078601 (+) 759 WP_342389121.1 TIGR00282 family metallophosphoesterase -
  RQP18_RS05335 (RQP18_05300) - 1078701..1080440 (+) 1740 WP_342389122.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37864.96 Da        Isoelectric Point: 4.9517

>NTDB_id=901831 RQP18_RS05315 WP_342389118.1 1074725..1075780(+) (recA) [Salinicoccus sp. Bachu38]
MDERQKAIDTVIKNMEKSFGKGAVMKLGDDVGRKVSTVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
AQRNGGIAAFIDAEHALDPDYAKNLGVDIENLYLSQPDTGEQALEITEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAISKSNTTAMFINQIREKVGVMFGNPETTSGGRALKFYSSVRLEVRRAEQLKLGQEIVGNRT
KIKVVKNKVAPPFRVAEVDIMYGKGISKTGEMVDLGVEYDIVEKSGAWYSYEGERLGQGKENVKEHLANNPALLEEIEGK
LRTALGFGGEKKEEDAKEEAAGDKLFDEDEI

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=901831 RQP18_RS05315 WP_342389118.1 1074725..1075780(+) (recA) [Salinicoccus sp. Bachu38]
ATGGACGAAAGACAAAAAGCGATAGATACAGTGATAAAGAACATGGAGAAGTCATTTGGCAAAGGCGCAGTCATGAAGCT
TGGGGACGATGTTGGGCGCAAAGTATCCACAGTATCCTCAGGCTCCATCACTTTGGACAAGGCGCTTGGTGTAGGCGGAT
ATCCGAAAGGACGGATCATAGAGATCTACGGCCCGGAATCCTCCGGTAAGACGACCGTGGCACTGCATGCGATAGCTGAA
GCACAGAGGAATGGCGGCATTGCAGCATTCATCGATGCAGAGCATGCACTGGATCCCGACTATGCGAAAAATCTTGGCGT
AGATATCGAGAACCTCTATCTTTCCCAACCGGATACAGGTGAGCAGGCACTGGAAATCACCGAGGCATTTGTAAGAAGTG
GTGCAGTGGACATCGTGGTCGTCGACTCGGTTGCAGCACTGACGCCGAAGGCGGAAATCGAAGGCGAGATGGGCGACGCC
CACGTCGGCCTCCAGGCGAGGCTCATGTCCCAGGCATTGAGGAAGCTTTCCGGTGCGATTTCCAAAAGTAATACGACAGC
CATGTTCATCAACCAGATCCGTGAAAAGGTCGGTGTCATGTTCGGTAATCCTGAAACGACATCCGGCGGCCGTGCACTCA
AGTTCTACAGCTCCGTACGTCTTGAAGTCAGACGTGCCGAACAGCTGAAACTCGGACAGGAGATCGTCGGCAACCGCACC
AAGATCAAAGTGGTCAAGAACAAGGTCGCACCGCCATTCCGGGTCGCAGAAGTCGACATCATGTATGGTAAGGGCATCTC
CAAGACAGGAGAGATGGTCGACCTTGGCGTAGAGTACGACATCGTTGAAAAGAGCGGTGCCTGGTACTCCTATGAAGGCG
AACGGCTTGGACAGGGCAAGGAGAACGTAAAAGAGCATCTTGCCAATAATCCGGCACTGCTCGAAGAGATCGAAGGCAAG
CTGCGTACCGCCCTCGGTTTCGGCGGAGAGAAGAAGGAAGAGGATGCCAAAGAGGAAGCGGCTGGAGACAAGCTGTTTGA
CGAGGACGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

74.924

93.162

0.698
  recA Latilactobacillus sakei subsp. sakei 23K

70.359

95.157

0.67
  recA Streptococcus pneumoniae R6

61.58

100

0.644
  recA Streptococcus pneumoniae Rx1

61.58

100

0.644
  recA Streptococcus pneumoniae D39

61.58

100

0.644
  recA Streptococcus pneumoniae TIGR4

61.58

100

0.644
  recA Streptococcus mutans UA159

63.739

100

0.641
  recA Streptococcus mitis NCTC 12261

64.244

98.006

0.63
  recA Streptococcus pyogenes NZ131

66.869

93.732

0.627
  recA Streptococcus mitis SK321

63.953

98.006

0.627
  recA Acinetobacter baumannii D1279779

63.158

97.436

0.615
  recA Helicobacter pylori strain NCTC11637

64.724

92.877

0.601
  recA Helicobacter pylori 26695

64.724

92.877

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.584

97.151

0.598
  recA Lactococcus lactis subsp. cremoris KW2

63.526

93.732

0.595
  recA Acinetobacter baylyi ADP1

64.198

92.308

0.593
  recA Neisseria gonorrhoeae MS11

63.804

92.877

0.593
  recA Neisseria gonorrhoeae strain FA1090

63.804

92.877

0.593
  recA Neisseria gonorrhoeae MS11

63.804

92.877

0.593
  recA Ralstonia pseudosolanacearum GMI1000

66.026

88.889

0.587
  recA Pseudomonas stutzeri DSM 10701

63.19

92.877

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

94.017

0.584
  recA Vibrio cholerae strain A1552

62.883

92.877

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.883

92.877

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

93.162

0.558
  recA Glaesserella parasuis strain SC1401

59.568

92.308

0.55