Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R2B70_RS17480 Genome accession   NZ_CP137630
Coordinates   3791936..3793000 (-) Length   354 a.a.
NCBI ID   WP_042079364.1    Uniprot ID   -
Organism   Aeromonas sp. XH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3786936..3798000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B70_RS17460 (R2B70_17460) csrA 3786956..3787144 (-) 189 WP_005315760.1 carbon storage regulator CsrA -
  R2B70_RS17465 (R2B70_17465) - 3787238..3788485 (-) 1248 WP_042079361.1 aspartate kinase -
  R2B70_RS17470 (R2B70_17470) alaS 3788502..3791126 (-) 2625 WP_042079362.1 alanine--tRNA ligase -
  R2B70_RS17475 (R2B70_17475) - 3791395..3791895 (-) 501 WP_318163373.1 regulatory protein RecX -
  R2B70_RS17480 (R2B70_17480) recA 3791936..3793000 (-) 1065 WP_042079364.1 recombinase RecA Machinery gene
  R2B70_RS17485 (R2B70_17485) pncC 3793081..3793572 (-) 492 WP_209793823.1 nicotinamide-nucleotide amidase -
  R2B70_RS17490 (R2B70_17490) - 3793773..3794180 (+) 408 WP_279987015.1 Spy/CpxP family protein refolding chaperone -
  R2B70_RS17495 (R2B70_17495) mutS 3794429..3796999 (+) 2571 WP_318162084.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38082.65 Da        Isoelectric Point: 4.8988

>NTDB_id=899536 R2B70_RS17480 WP_042079364.1 3791936..3793000(-) (recA) [Aeromonas sp. XH]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQRKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFSENKALAAEVEA
KLRELLLSGAAPVEEKAPAAEYDEYEAENEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=899536 R2B70_RS17480 WP_042079364.1 3791936..3793000(-) (recA) [Aeromonas sp. XH]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGACATCGAAGCCATCTCCACCGGCTCCCTCTCCCTGGACGTGGCGCTCGGGATCGGCG
GTCTGCCGTGCGGTCGCATCGTCGAGATCTATGGCCCGGAATCCTCCGGCAAGACCACGCTGACCCTGCAGGTGATCGCC
GAGGCCCAGCGCAAGGGCAAGACCTGCGCCTTCGTCGATGCGGAGCACGCGCTGGATCCCATCTATGCCGCCAAGCTGGG
CGTCAACGTCGATGACCTGCTGATCTCCCAGCCGGATACCGGCGAGCAGGCCCTGGAGATCTGCGACATGCTGGTGCGCT
CCAACGCCGTCGACGTCATCATCGTCGACTCCGTGGCCGCCCTGACCCCGAAAGCGGAAATCGAGGGCGAGATGGGGGAC
TCCCACGTCGGCCTGCAGGCACGCCTGATGTCCCAGGCCCTGCGCAAGCTGACCGCCAACATCAAGAACGCGAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATTGGCGTCATGTTCGGCAGCCCGGAGACCACCACGGGCGGTAACGCCC
TCAAGTTCTATGCCTCCGTTCGCCTCGACATCCGCCGTACCGGCGCCATCAAGGAAGGGGACGAAGTGGTCGGCAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCCGAGTTCCAGATCTTCTACGGTGCCGGCAT
CTCCAAGGAAGGCGAACTGGTGGACCTGGGCGTCAAGCACAAGCTGATCGACAAAGCCGGTGCCTGGTACAGCTACAATG
GCGAGAAGATCGGCCAGGGCAAGGCCAACGTGATGAAGCTGTTCTCTGAGAACAAGGCGCTGGCCGCCGAGGTTGAAGCC
AAGCTGCGCGAGCTGCTGCTCTCCGGTGCCGCTCCTGTGGAAGAGAAGGCTCCCGCTGCCGAGTACGACGAGTACGAAGC
CGAAAACGAACAAGAGTTCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

75.637

99.718

0.754
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.637

99.718

0.754
  recA Pseudomonas stutzeri DSM 10701

78.529

96.045

0.754
  recA Acinetobacter baylyi ADP1

70.977

98.305

0.698
  recA Acinetobacter baumannii D1279779

72.353

96.045

0.695
  recA Glaesserella parasuis strain SC1401

69.602

99.435

0.692
  recA Neisseria gonorrhoeae MS11

68.272

99.718

0.681
  recA Neisseria gonorrhoeae MS11

68.272

99.718

0.681
  recA Neisseria gonorrhoeae strain FA1090

68.272

99.718

0.681
  recA Ralstonia pseudosolanacearum GMI1000

72.644

92.938

0.675
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

93.503

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.204

90.113

0.588
  recA Helicobacter pylori strain NCTC11637

64

91.808

0.588
  recA Helicobacter pylori 26695

63.385

91.808

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

59.941

95.198

0.571
  recA Streptococcus pneumoniae R6

60.991

91.243

0.556
  recA Streptococcus pneumoniae TIGR4

60.991

91.243

0.556
  recA Streptococcus mitis SK321

60.991

91.243

0.556
  recA Streptococcus pneumoniae Rx1

60.991

91.243

0.556
  recA Streptococcus pneumoniae D39

60.991

91.243

0.556
  recA Streptococcus mitis NCTC 12261

60.681

91.243

0.554
  recA Streptococcus pyogenes NZ131

60.372

91.243

0.551
  recA Streptococcus mutans UA159

60.062

91.243

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.841

92.655

0.545
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.243

0.528