Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R5R33_RS03400 Genome accession   NZ_CP137555
Coordinates   753591..754622 (-) Length   343 a.a.
NCBI ID   WP_318954647.1    Uniprot ID   A0AAU0N095
Organism   Microbulbifer pacificus strain SPO729     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 748591..759622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R33_RS03375 (R5R33_03375) - 749678..750040 (-) 363 WP_318954643.1 histidine triad nucleotide-binding protein -
  R5R33_RS03380 (R5R33_03380) - 750090..750278 (-) 189 WP_318955688.1 Trm112 family protein -
  R5R33_RS03385 (R5R33_03385) - 750416..751276 (-) 861 WP_318954644.1 alpha/beta hydrolase -
  R5R33_RS03390 (R5R33_03390) glpK 751413..752900 (-) 1488 WP_318954645.1 glycerol kinase GlpK -
  R5R33_RS03395 (R5R33_03395) - 753010..753588 (-) 579 WP_318954646.1 regulatory protein RecX -
  R5R33_RS03400 (R5R33_03400) recA 753591..754622 (-) 1032 WP_318954647.1 recombinase RecA Machinery gene
  R5R33_RS03405 (R5R33_03405) - 754754..755278 (-) 525 WP_318954648.1 CinA family protein -
  R5R33_RS03410 (R5R33_03410) - 755309..755824 (-) 516 WP_318954649.1 hypothetical protein -
  R5R33_RS03415 (R5R33_03415) - 755886..756512 (-) 627 WP_318954650.1 LysE family translocator -
  R5R33_RS03420 (R5R33_03420) - 756526..757437 (-) 912 WP_318954651.1 DMT family transporter -
  R5R33_RS03425 (R5R33_03425) recJ 757521..759251 (-) 1731 WP_318954652.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36690.94 Da        Isoelectric Point: 5.1690

>NTDB_id=899029 R5R33_RS03400 WP_318954647.1 753591..754622(-) (recA) [Microbulbifer pacificus strain SPO729]
MDSNKDKALQAALSQIERQFGKGTVMRMGEKGREPIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGEEVVGNE
TRVKVVKNKVAPPFKQAEFQIMYGEGSNLLGEIIDYGVKLGLIDKAGAWYSYKGDKIGQGKANAAKFLKENTDIRNEIET
QLRAQLLGETGAAQPAAVEAAED

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=899029 R5R33_RS03400 WP_318954647.1 753591..754622(-) (recA) [Microbulbifer pacificus strain SPO729]
ATGGATTCCAACAAAGACAAGGCATTACAGGCAGCGCTGTCTCAGATCGAGCGCCAGTTTGGCAAGGGCACCGTCATGCG
CATGGGGGAAAAGGGACGCGAGCCTATCCCCGCTATTTCCACCGGCTCACTGGGCCTGGATGTGGCCCTGGGTATTGGCG
GTCTGCCCCGCGGCCGTATTGTTGAGATCTATGGCCCGGAGTCTTCCGGTAAAACCACGCTCACCCTGCAGGTGATTGCC
GAAGCCCAGCGCAAGGGTGGTACCTGCGCCTTCGTGGATGCGGAACACGCGCTGGACCCGATCTACGCAGAAAAGCTCGG
CGTCAATGTCGATGAGCTGATCGTGTCCCAGCCGGACACCGGTGAACAGGCGCTGGAAGTGGCGGATATGCTGGTGCGCT
CTGGCGCGGTAGACGTGCTGGTTGTGGACTCCGTGGCGGCGCTGACCCCGCGTGCGGAAATCGAAGGCGAGATGGGCGAC
TCCCATGTCGGTCTGCAGGCGCGCCTGATGTCCCAGGCACTGCGCAAGCTGACCGGTAACATCAAGAATACCAACACCCT
GTGTATCTTCATTAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCTCCCCGGAAACCACCACCGGTGGTAACGCAC
TCAAGTTCTACTCTTCTGTGCGCCTCGATATCCGTCGCATCGGCTCCGTGAAGGAGGGCGAGGAAGTCGTCGGTAACGAG
ACCCGGGTAAAAGTGGTCAAGAACAAGGTGGCGCCGCCCTTTAAACAGGCGGAGTTCCAGATCATGTATGGCGAAGGTTC
CAACCTGCTGGGCGAGATCATCGACTATGGCGTCAAGCTGGGCCTGATCGATAAAGCCGGTGCCTGGTACAGCTACAAGG
GCGACAAGATTGGTCAGGGTAAGGCCAATGCGGCCAAATTCCTGAAGGAAAACACGGATATCCGTAATGAAATCGAAACC
CAGCTGCGTGCCCAGCTGCTGGGTGAAACCGGCGCTGCCCAGCCGGCGGCAGTGGAAGCCGCGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.134

100

0.781
  recA Vibrio cholerae strain A1552

71.72

100

0.717
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.72

100

0.717
  recA Acinetobacter baumannii D1279779

73.214

97.959

0.717
  recA Acinetobacter baylyi ADP1

71.429

100

0.714
  recA Neisseria gonorrhoeae MS11

73.231

94.752

0.694
  recA Neisseria gonorrhoeae MS11

73.231

94.752

0.694
  recA Neisseria gonorrhoeae strain FA1090

73.231

94.752

0.694
  recA Ralstonia pseudosolanacearum GMI1000

70.732

95.627

0.676
  recA Glaesserella parasuis strain SC1401

68.862

97.376

0.671
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.025

93.003

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

66.044

93.586

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

96.501

0.609
  recA Helicobacter pylori strain NCTC11637

63.914

95.335

0.609
  recA Helicobacter pylori 26695

63.914

95.335

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

63.407

92.42

0.586
  recA Streptococcus pneumoniae D39

60.671

95.627

0.58
  recA Streptococcus mitis NCTC 12261

60.671

95.627

0.58
  recA Streptococcus pneumoniae Rx1

60.671

95.627

0.58
  recA Streptococcus pneumoniae R6

60.671

95.627

0.58
  recA Streptococcus pneumoniae TIGR4

60.671

95.627

0.58
  recA Streptococcus mutans UA159

61.231

94.752

0.58
  recA Streptococcus mitis SK321

60.366

95.627

0.577
  recA Streptococcus pyogenes NZ131

59.568

94.461

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

94.169

0.56
  recA Lactococcus lactis subsp. cremoris KW2

58.589

95.044

0.557