Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R5U36_RS09880 Genome accession   NZ_CP137472
Coordinates   2044413..2045459 (+) Length   348 a.a.
NCBI ID   WP_317737732.1    Uniprot ID   -
Organism   Enterococcus faecium strain C4-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2039413..2050459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5U36_RS09865 (R5U36_09865) - 2041113..2042036 (+) 924 WP_002287423.1 RodZ domain-containing protein -
  R5U36_RS09870 (R5U36_09870) pgsA 2042245..2042823 (+) 579 WP_002298210.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R5U36_RS09875 (R5U36_09875) cinA 2043063..2044304 (+) 1242 WP_002298209.1 competence/damage-inducible protein A Machinery gene
  R5U36_RS09880 (R5U36_09880) recA 2044413..2045459 (+) 1047 WP_317737732.1 recombinase RecA Machinery gene
  R5U36_RS09885 (R5U36_09885) rny 2045870..2047426 (+) 1557 WP_002287336.1 ribonuclease Y -
  R5U36_RS09890 (R5U36_09890) proC 2047505..2048311 (-) 807 WP_002298207.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37442.83 Da        Isoelectric Point: 4.8330

>NTDB_id=898168 R5U36_RS09880 WP_317737732.1 2044413..2045459(+) (recA) [Enterococcus faecium strain C4-1]
MADDRKVALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDEKGQEELPLEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=898168 R5U36_RS09880 WP_317737732.1 2044413..2045459(+) (recA) [Enterococcus faecium strain C4-1]
TTGGCAGATGATCGTAAAGTAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAGCAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTATCCCCGTGGACGTATTATCGAAGTATACGGACCTGAAAGTTCAGGTAAAACAACAGTGGCGCTACATGCTATTGCA
GAAGTACAAAAAAATGGCGGAACTGCCGCTTTTATCGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGATACAGGAGAACAAGGTCTGGAGATCGCTGATGCTTTAGTATCAA
GTGGAGCTGTAGACATCGTAGTAGTCGATTCAGTTGCCGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGCGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATTAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACGCCTGGAGGACGCGCAT
TGAAATTTTACGCAACGATCCGTTTAGAAGTACGCCGTGCAGAACAATTGAAACAAGGAACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTGAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGCTTAGGTAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATCGTTGATAAAAGTGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGCCAAGGACGGGAAAACGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGTATTGGCGAAGAAGTCGCTGTCCCAGAAGATGAAAAAGGACAAGAAGAATTGCCTTTAGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.324

99.425

0.779
  recA Bacillus subtilis subsp. subtilis str. 168

79.077

93.391

0.739
  recA Streptococcus pneumoniae R6

69.231

100

0.698
  recA Streptococcus pneumoniae TIGR4

69.231

100

0.698
  recA Streptococcus pneumoniae Rx1

69.231

100

0.698
  recA Streptococcus pneumoniae D39

69.231

100

0.698
  recA Streptococcus mitis SK321

71.131

96.552

0.687
  recA Streptococcus mitis NCTC 12261

70.833

96.552

0.684
  recA Streptococcus mutans UA159

65.556

100

0.678
  recA Streptococcus pyogenes NZ131

69.789

95.115

0.664
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.54

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.563

0.595
  recA Neisseria gonorrhoeae strain FA1090

62.614

94.54

0.592
  recA Neisseria gonorrhoeae MS11

62.614

94.54

0.592
  recA Neisseria gonorrhoeae MS11

62.614

94.54

0.592
  recA Helicobacter pylori 26695

57.925

99.713

0.578
  recA Helicobacter pylori strain NCTC11637

57.925

99.713

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.391

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.816

0.572
  recA Acinetobacter baumannii D1279779

61.61

92.816

0.572
  recA Vibrio cholerae strain A1552

61.61

92.816

0.572
  recA Acinetobacter baylyi ADP1

61.3

92.816

0.569
  recA Ralstonia pseudosolanacearum GMI1000

62.939

89.943

0.566
  recA Pseudomonas stutzeri DSM 10701

60.494

93.103

0.563
  recA Glaesserella parasuis strain SC1401

60.748

92.241

0.56