Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | R2B51_RS06830 | Genome accession | NZ_CP137339 |
| Coordinates | 1416515..1417561 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain WXL8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1411725..1462359 | 1416515..1417561 | within | 0 |
Gene organization within MGE regions
Location: 1411725..1462359
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2B51_RS06815 | mnmH | 1413333..1414391 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| R2B51_RS06820 | rimO | 1414385..1415719 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| R2B51_RS06825 | pgsA | 1415706..1416248 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| R2B51_RS06830 | recA | 1416515..1417561 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| R2B51_RS06835 | rny | 1417737..1419278 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| R2B51_RS06840 | - | 1419588..1421924 (+) | 2337 | WP_077744860.1 | diguanylate cyclase | - |
| R2B51_RS06845 | - | 1422730..1422828 (+) | 99 | Protein_1256 | transposase | - |
| R2B51_RS06850 | tnpB | 1422830..1423948 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| R2B51_RS06855 | - | 1424280..1426061 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| R2B51_RS06860 | lepB | 1426141..1426671 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| R2B51_RS06865 | - | 1426711..1427535 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| R2B51_RS06870 | - | 1427792..1428703 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| R2B51_RS06875 | purB | 1428842..1430287 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| R2B51_RS06880 | - | 1430588..1431040 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| R2B51_RS06885 | - | 1431259..1432455 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| R2B51_RS06890 | galT | 1432840..1433790 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| R2B51_RS06895 | - | 1433911..1434663 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| R2B51_RS06900 | - | 1434755..1435531 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| R2B51_RS06905 | - | 1435846..1437744 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| R2B51_RS06910 | - | 1437872..1438993 (-) | 1122 | WP_003419591.1 | glycosyltransferase | - |
| R2B51_RS06915 | - | 1439192..1439524 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| R2B51_RS06920 | - | 1439511..1440569 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| R2B51_RS06925 | - | 1440562..1441632 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| R2B51_RS06930 | - | 1441734..1442270 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| R2B51_RS06935 | - | 1442390..1443097 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| R2B51_RS06940 | - | 1443099..1443818 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| R2B51_RS06945 | - | 1443820..1444590 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| R2B51_RS06950 | - | 1444724..1446115 (+) | 1392 | WP_107602870.1 | sensor histidine kinase KdpD | - |
| R2B51_RS06955 | - | 1446191..1447012 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| R2B51_RS06960 | - | 1447263..1448417 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| R2B51_RS06965 | - | 1448600..1448800 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| R2B51_RS06970 | - | 1449221..1449649 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| R2B51_RS06975 | - | 1449792..1450547 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| R2B51_RS06980 | - | 1451248..1451754 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| R2B51_RS06985 | - | 1451836..1452156 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| R2B51_RS06990 | - | 1452325..1452522 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| R2B51_RS06995 | - | 1452626..1453066 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| R2B51_RS07000 | - | 1453315..1453758 (+) | 444 | WP_003419644.1 | DUF6838 family protein | - |
| R2B51_RS07005 | - | 1453763..1454827 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| R2B51_RS07010 | - | 1454841..1455269 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| R2B51_RS07015 | - | 1455383..1455829 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| R2B51_RS07020 | - | 1456023..1458476 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| R2B51_RS07025 | - | 1458476..1458898 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| R2B51_RS07030 | - | 1459180..1460709 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| R2B51_RS07035 | - | 1460725..1461051 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| R2B51_RS07040 | - | 1461051..1461479 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=897524 R2B51_RS06830 WP_003419530.1 1416515..1417561(+) (recA) [Clostridioides difficile strain WXL8]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=897524 R2B51_RS06830 WP_003419530.1 1416515..1417561(+) (recA) [Clostridioides difficile strain WXL8]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.