Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R6H26_RS08710 Genome accession   NZ_CP137338
Coordinates   1732199..1733269 (+) Length   356 a.a.
NCBI ID   WP_404790055.1    Uniprot ID   -
Organism   Altericista sp. CCNU0014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1727199..1738269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6H26_RS08685 (R6H26_08630) - 1727835..1729169 (+) 1335 WP_404790046.1 hypothetical protein -
  R6H26_RS08690 (R6H26_08635) - 1729402..1730154 (+) 753 WP_404790048.1 phytochelatin synthase family protein -
  R6H26_RS08695 (R6H26_08640) - 1730216..1730425 (-) 210 WP_404790050.1 hypothetical protein -
  R6H26_RS08700 (R6H26_08645) yidD 1730624..1730911 (-) 288 WP_404790052.1 membrane protein insertion efficiency factor YidD -
  R6H26_RS08705 (R6H26_08650) - 1731211..1731855 (-) 645 WP_404790054.1 acetoacetate decarboxylase family protein -
  R6H26_RS08710 (R6H26_08655) recA 1732199..1733269 (+) 1071 WP_404790055.1 recombinase RecA Machinery gene
  R6H26_RS08715 (R6H26_08660) - 1733400..1734743 (+) 1344 WP_404790057.1 ATP-binding protein -
  R6H26_RS08720 (R6H26_08665) ubiE 1734750..1735475 (+) 726 WP_404790059.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  R6H26_RS08725 (R6H26_08670) - 1735521..1735853 (-) 333 WP_404790061.1 hypothetical protein -
  R6H26_RS08730 (R6H26_08675) aroB 1735856..1736971 (-) 1116 WP_404790063.1 3-dehydroquinate synthase -
  R6H26_RS08735 (R6H26_08680) - 1737418..1737630 (+) 213 WP_404790066.1 chlorophyll a/b-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38119.55 Da        Isoelectric Point: 5.0392

>NTDB_id=897504 R6H26_RS08710 WP_404790055.1 1732199..1733269(+) (recA) [Altericista sp. CCNU0014]
MSTEITANPEKQKALNIVLSQIERSFGKGSIMRLGDATRMRVETIPSGSLTLDLALGGGLPKGRVVELYGPESSGKTTLA
LHAIAEVQKAGGVAAFVDAEHALDPTYAAAIGVDIDNLLVAQPDTGEAGLEIVDQLVRSTAVDLVVIDSVAALVPRAEIE
GEMGDVHVGLQARLMSQALRKITGNIGKTGCTVFFLNQLRQKIGISYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTE
EFGIRAKVKVVKNKIAPPFRIAEFDIIFGTGISSLGCILDMAEETNVVIRKGAWYSYNGDNIGQGRDNTIKYMEENPDFA
KDVEKLVRQKLDGGAVVSANSVVPVDIHAEDEGEEP

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=897504 R6H26_RS08710 WP_404790055.1 1732199..1733269(+) (recA) [Altericista sp. CCNU0014]
ATGTCTACAGAAATTACCGCCAATCCAGAAAAGCAAAAAGCGCTCAATATTGTGCTCTCGCAGATTGAGCGATCCTTTGG
CAAAGGTTCCATTATGCGGTTGGGGGATGCAACGCGGATGCGGGTTGAAACGATCCCCAGCGGTTCGCTGACGTTAGACC
TAGCCTTAGGGGGTGGTTTACCAAAAGGTCGGGTGGTCGAACTGTACGGCCCAGAAAGCTCCGGTAAAACCACTCTGGCC
CTTCACGCGATCGCCGAGGTTCAAAAAGCAGGCGGAGTGGCCGCCTTCGTGGACGCAGAACATGCCCTAGATCCTACCTA
TGCAGCGGCGATCGGCGTGGACATCGATAACCTGCTCGTCGCGCAACCCGATACGGGCGAAGCTGGACTTGAAATTGTGG
ATCAGCTCGTGCGTTCCACTGCCGTCGACCTCGTCGTCATCGACTCCGTTGCAGCGCTGGTTCCTCGCGCTGAAATTGAA
GGCGAAATGGGAGACGTCCACGTCGGCTTGCAGGCGCGACTGATGAGTCAAGCCCTACGCAAAATCACAGGCAACATCGG
TAAAACGGGCTGTACGGTATTTTTCTTAAACCAACTCCGGCAAAAGATCGGTATCAGCTACGGCAACCCCGAAACCACCA
CTGGCGGTAACGCGCTGAAGTTCTACGCGTCAGTTCGCCTAGATATTCGCCGCATCCAAACCTTGAAAAAAGGAACCGAA
GAATTCGGGATCCGCGCCAAGGTAAAGGTGGTCAAAAATAAGATCGCGCCTCCGTTTCGAATTGCTGAATTTGACATCAT
TTTTGGAACGGGGATTTCTTCTCTCGGCTGTATCTTAGATATGGCCGAGGAAACGAATGTTGTCATTCGCAAAGGCGCTT
GGTACAGCTATAACGGCGACAACATCGGTCAAGGCCGCGACAACACCATTAAGTACATGGAAGAAAATCCAGATTTTGCC
AAGGATGTTGAAAAGCTAGTGCGGCAAAAGCTGGATGGCGGTGCAGTGGTGTCGGCGAATTCGGTCGTTCCCGTCGACAT
TCACGCTGAGGATGAGGGCGAAGAACCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

61.96

97.472

0.604
  recA Pseudomonas stutzeri DSM 10701

61.808

96.348

0.596
  recA Acinetobacter baylyi ADP1

65.528

90.449

0.593
  recA Ralstonia pseudosolanacearum GMI1000

65.273

87.36

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

90.449

0.559
  recA Vibrio cholerae strain A1552

61.801

90.449

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.061

97.472

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.754

94.663

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

59.819

92.978

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.991

90.73

0.553
  recA Neisseria gonorrhoeae MS11

61.059

90.169

0.551
  recA Neisseria gonorrhoeae MS11

61.059

90.169

0.551
  recA Neisseria gonorrhoeae strain FA1090

61.059

90.169

0.551
  recA Glaesserella parasuis strain SC1401

60.372

90.73

0.548
  recA Streptococcus pneumoniae D39

59.146

92.135

0.545
  recA Streptococcus pneumoniae Rx1

59.146

92.135

0.545
  recA Streptococcus pneumoniae R6

59.146

92.135

0.545
  recA Streptococcus pneumoniae TIGR4

59.146

92.135

0.545
  recA Streptococcus mutans UA159

59.385

91.292

0.542
  recA Helicobacter pylori strain NCTC11637

58.896

91.573

0.539
  recA Helicobacter pylori 26695

58.896

91.573

0.539
  recA Streptococcus mitis SK321

59.077

91.292

0.539
  recA Streptococcus mitis NCTC 12261

59.077

91.292

0.539
  recA Lactococcus lactis subsp. cremoris KW2

58.333

91.011

0.531
  recA Streptococcus pyogenes NZ131

57.187

91.854

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.046

91.854

0.506