Detailed information NTG0896745

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ABC810_RS09840
• Genome accession: NZ_CP155532
• Coordinates: 1960491..1961489 (-)
• Length: 332 a.a.
• NCBI ID: WP_001860761.1
• Uniprot ID: C1CC50
• Organism: Streptococcus pneumoniae strain SP264
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1955491..1966489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABC810_RS09820 (ABC810_09825)	eeP	1956856..1958115 (-)	1260	WP_000900659.1	RIP metalloprotease RseP	Regulator
ABC810_RS09825 (ABC810_09830)	-	1958137..1958940 (-)	804	WP_000189848.1	phosphatidate cytidylyltransferase	-
ABC810_RS09830 (ABC810_09835)	-	1958949..1959707 (-)	759	WP_000466719.1	isoprenyl transferase	-
ABC810_RS09835 (ABC810_09840)	-	1959938..1960510 (-)	573	WP_001098895.1	nucleotidyltransferase family protein	-
ABC810_RS09840 (ABC810_09845)	ruvB	1960491..1961489 (-)	999	WP_001860761.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ABC810_RS09845 (ABC810_09850)	-	1961623..1961715 (+)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
ABC810_RS09850 (ABC810_09855)	-	1962530..1962946 (-)	417	WP_000628392.1	GNAT family N-acetyltransferase	-
ABC810_RS09855 (ABC810_09860)	-	1962958..1963653 (-)	696	WP_001144922.1	GNAT family protein	-
ABC810_RS09860 (ABC810_09865)	leuS	1963847..1966348 (-)	2502	WP_000011766.1	leucine--tRNA ligase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37230.69 Da
• Isoelectric Point: 4.5393

>NTDB_id=896745 ABC810_RS09840 WP_001860761.1 1960491..1961489(-) (ruvB) [Streptococcus pneumoniae strain SP264]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHAGLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=896745 ABC810_RS09840 WP_001860761.1 1960491..1961489(-) (ruvB) [Streptococcus pneumoniae strain SP264]
ATGAGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCCAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAACGAACTGGGAGTCAATCTT
AAGCAGACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTACT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATCGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCCAATCCGCTACGGGCACGTTTTGGGATTACAGGCCATATGGAGTATTATGCCCATGCTGGCTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATTGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: C1CC50

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	48.193	100	0.482