Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R4B61_RS02620 Genome accession   NZ_CP137138
Coordinates   568514..569599 (-) Length   361 a.a.
NCBI ID   WP_413628091.1    Uniprot ID   -
Organism   Fructilactobacillus vespulae strain Mu01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 563514..574599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4B61_RS02595 (R4B61_02580) - 563831..564391 (-) 561 WP_413628086.1 ECF transporter S component -
  R4B61_RS02600 (R4B61_02585) - 564833..565423 (-) 591 WP_413628087.1 helix-turn-helix domain-containing protein -
  R4B61_RS02605 (R4B61_02590) - 565512..566216 (-) 705 WP_413628088.1 class I SAM-dependent methyltransferase -
  R4B61_RS02610 (R4B61_02595) - 566267..566914 (-) 648 WP_413628089.1 energy-coupling factor transporter transmembrane component T family protein -
  R4B61_RS02615 (R4B61_02600) - 566914..568314 (-) 1401 WP_413628090.1 ATP-binding cassette domain-containing protein -
  R4B61_RS02620 (R4B61_02605) recA 568514..569599 (-) 1086 WP_413628091.1 recombinase RecA Machinery gene
  R4B61_RS02625 (R4B61_02610) - 569797..570504 (+) 708 WP_413628092.1 AzlC family ABC transporter permease -
  R4B61_RS02630 (R4B61_02615) - 570491..570817 (+) 327 WP_413628093.1 AzlD domain-containing protein -
  R4B61_RS02635 (R4B61_02620) - 571112..572218 (+) 1107 WP_413628094.1 PTS transporter subunit IIC -
  R4B61_RS02640 (R4B61_02625) - 572320..572445 (+) 126 WP_413628095.1 hypothetical protein -
  R4B61_RS02645 (R4B61_02630) - 572467..572991 (-) 525 WP_413628096.1 N-acetyltransferase family protein -
  R4B61_RS02650 (R4B61_02635) - 573066..574253 (-) 1188 WP_413628097.1 thiolase family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38447.86 Da        Isoelectric Point: 5.3470

>NTDB_id=896467 R4B61_RS02620 WP_413628091.1 568514..569599(-) (recA) [Fructilactobacillus vespulae strain Mu01]
MAASSKKNVQDARQAELDKALKQIKKEFGTGAIMRMGESPTTNVSAISSGILSLDIALGIGGFPRGRVVEIFGAESSGKT
TIALQTVAALQKNGGTAAYIDAENAMDPEYAKALGVDIDNLLLSQPGTGEEGLQIADALIGSGAIDLVVVDSVAALVPKS
EIDGDIGDSHVGLQARLMSQALRKLTANINKTNTVVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLRVSGSKQSKD
GQEIVGKETKIKVAKNKVAPPFKTVDTLMSFGKGIEPVADMVNLAVDKDIINKSGSWYSYGEERLGQGLNKTVANLHEKP
EMIEELTHKVRVAYGIEKEPESDVKPDTAEKPADDEPKLDL

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=896467 R4B61_RS02620 WP_413628091.1 568514..569599(-) (recA) [Fructilactobacillus vespulae strain Mu01]
ATGGCCGCAAGTTCTAAAAAAAACGTTCAAGATGCTCGCCAAGCCGAGCTTGATAAAGCGTTAAAACAAATTAAGAAAGA
ATTTGGTACCGGTGCAATCATGCGTATGGGAGAATCTCCTACTACTAACGTGAGCGCCATCTCATCCGGGATTTTATCAC
TAGATATTGCTCTTGGAATTGGTGGATTCCCCCGTGGTCGGGTGGTTGAAATCTTTGGTGCTGAATCATCTGGTAAAACT
ACAATTGCATTACAAACCGTTGCTGCATTACAAAAAAATGGTGGTACCGCTGCTTATATCGATGCTGAAAACGCAATGGA
TCCCGAATACGCCAAAGCACTAGGCGTTGATATTGATAACTTACTACTTTCACAACCAGGAACTGGTGAAGAAGGATTAC
AAATTGCCGATGCCCTAATTGGTTCTGGTGCAATTGATTTAGTCGTGGTTGATTCCGTTGCTGCCTTAGTACCTAAGTCA
GAAATCGATGGAGATATTGGTGATTCACACGTGGGTCTACAAGCCCGTTTAATGTCACAAGCCCTTCGTAAGTTGACCGC
TAACATCAATAAAACTAACACAGTGGTAATCTTCATTAACCAACTTCGTGAAAAAGTGGGAGTAATGTTTGGTAACCCTG
AAACTACTCCTGGTGGTCGTGCTCTTAAGTTCTACTCGAGTGTCCGGCTTCGAGTTAGTGGTTCTAAACAATCAAAAGAT
GGTCAAGAAATTGTGGGTAAGGAAACTAAAATCAAAGTTGCCAAAAACAAGGTGGCTCCTCCCTTCAAAACCGTTGATAC
CCTTATGAGTTTTGGTAAAGGAATTGAACCTGTTGCCGACATGGTCAACCTTGCCGTTGATAAAGACATTATCAACAAAT
CTGGTTCTTGGTATTCATACGGTGAAGAACGTTTAGGTCAAGGTCTAAACAAAACCGTTGCTAACCTGCACGAAAAACCA
GAAATGATTGAAGAACTTACTCATAAAGTTCGAGTTGCTTATGGAATTGAAAAAGAACCAGAAAGTGACGTTAAACCTGA
TACAGCTGAAAAACCAGCTGATGACGAACCAAAATTAGATCTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

61.236

98.615

0.604
  recA Streptococcus mutans UA159

60.724

99.446

0.604
  recA Streptococcus mitis SK321

60.955

98.615

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

64.776

92.798

0.601
  recA Lactococcus lactis subsp. cremoris KW2

61.364

97.507

0.598
  recA Streptococcus pneumoniae D39

59.722

99.723

0.596
  recA Streptococcus pneumoniae Rx1

59.722

99.723

0.596
  recA Streptococcus pneumoniae R6

59.722

99.723

0.596
  recA Streptococcus pneumoniae TIGR4

59.722

99.723

0.596
  recA Streptococcus pyogenes NZ131

61.159

95.568

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

61.538

90.028

0.554
  recA Acinetobacter baumannii D1279779

56.677

93.352

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

89.197

0.526
  recA Neisseria gonorrhoeae MS11

56.886

92.521

0.526
  recA Neisseria gonorrhoeae MS11

56.886

92.521

0.526
  recA Neisseria gonorrhoeae strain FA1090

56.886

92.521

0.526
  recA Acinetobacter baylyi ADP1

54.971

94.737

0.521
  recA Glaesserella parasuis strain SC1401

56.075

88.92

0.499
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.426

88.366

0.499
  recA Vibrio cholerae strain A1552

56.426

88.366

0.499
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

52.663

93.629

0.493
  recA Ralstonia pseudosolanacearum GMI1000

56.869

86.704

0.493
  recA Pseudomonas stutzeri DSM 10701

55.556

87.258

0.485
  recA Helicobacter pylori strain NCTC11637

52.108

91.967

0.479
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.121

91.413

0.476
  recA Helicobacter pylori 26695

51.807

91.967

0.476