Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R5L00_RS07460 Genome accession   NZ_CP137134
Coordinates   1693011..1694030 (+) Length   339 a.a.
NCBI ID   WP_107694405.1    Uniprot ID   A0AAU0KNQ3
Organism   Nitrosospira sp. Is2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688011..1699030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5L00_RS07435 (R5L00_07435) thiL 1688510..1689481 (+) 972 WP_317653998.1 thiamine-phosphate kinase -
  R5L00_RS07440 (R5L00_07440) - 1689462..1690109 (+) 648 WP_317654000.1 phosphatidylglycerophosphatase A -
  R5L00_RS07445 (R5L00_07445) - 1690228..1690737 (+) 510 WP_107694403.1 CinA family protein -
  R5L00_RS07450 (R5L00_07450) - 1690764..1691375 (-) 612 WP_107694543.1 TIGR00645 family protein -
  R5L00_RS07455 (R5L00_07455) - 1691517..1692881 (+) 1365 WP_317654002.1 tetratricopeptide repeat-containing serine protease family protein -
  R5L00_RS07460 (R5L00_07460) recA 1693011..1694030 (+) 1020 WP_107694405.1 recombinase RecA Machinery gene
  R5L00_RS07465 (R5L00_07465) recX 1694077..1694529 (+) 453 WP_107694406.1 recombination regulator RecX -
  R5L00_RS07470 (R5L00_07470) - 1694526..1694900 (+) 375 WP_317654003.1 hypothetical protein -
  R5L00_RS07475 (R5L00_07475) alaS 1694964..1697552 (+) 2589 WP_317654004.1 alanine--tRNA ligase -
  R5L00_RS07480 (R5L00_07480) trxB 1697595..1698545 (+) 951 WP_317654005.1 thioredoxin-disulfide reductase -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36314.68 Da        Isoelectric Point: 6.3075

>NTDB_id=896402 R5L00_RS07460 WP_107694405.1 1693011..1694030(+) (recA) [Nitrosospira sp. Is2]
MDENRSKALAAALSQIEKQFGKGSIMRLGASDVAKDVEVISTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI
AQMQKVGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNGEQALEIADMLVRSGSVDVVVVDSVAALTPRAEIEGEMG
EPQMGLQARLMSQALRKLTANIKRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGEEVIGS
ETRVKVVKNKVAPPFKQAEFDILYGEGISREGEIVELGVQHKLIEKSGAWYAYKGDKIGQGKDNAREFLKEHPEIAAEIE
SKIRAAVGVANPAETAAVA

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=896402 R5L00_RS07460 WP_107694405.1 1693011..1694030(+) (recA) [Nitrosospira sp. Is2]
ATGGACGAAAACAGAAGCAAAGCGCTCGCCGCGGCTCTCTCCCAGATCGAGAAACAGTTTGGCAAAGGCTCGATCATGCG
CCTGGGTGCGAGTGACGTCGCCAAAGACGTTGAGGTTATTTCCACCGGTTCACTTGGGCTCGATATTGCCCTGGGTGTGG
GCGGCCTTCCTCGCGGAAGGGTAGTGGAAATTTACGGTCCGGAATCCTCCGGCAAAACCACGCTTACGCTGCAGGTCATC
GCGCAGATGCAGAAAGTTGGCGGTACCGCGGCGTTTATCGACGCGGAGCACGCCCTGGATCCCCAATATGCACAAAAAAT
CGGGGTCAATGTCCAGGAGTTGCTGATTTCTCAGCCGGACAATGGGGAGCAGGCACTGGAAATTGCCGATATGCTGGTGC
GCTCCGGTTCCGTCGACGTGGTCGTGGTTGATTCGGTTGCGGCCCTGACGCCGCGCGCGGAAATCGAAGGTGAAATGGGC
GAGCCCCAAATGGGACTGCAAGCGCGACTGATGTCGCAAGCGTTACGCAAGCTTACCGCCAATATCAAACGCAGCAACAC
GATGGTGATTTTCATCAATCAGATACGCATGAAGATCGGCGTCATGTTCGGCAATCCGGAAACGACGACCGGCGGCAACG
CACTAAAATTCTACGCGTCGGTTCGCCTTGATATACGTCGCACCGGTTCCATTAAAAAAGGCGAAGAGGTCATCGGCAGC
GAAACACGCGTGAAGGTGGTCAAGAATAAGGTTGCGCCGCCCTTCAAACAGGCGGAATTCGATATCCTCTACGGAGAGGG
CATTTCGCGCGAAGGCGAAATTGTCGAGCTGGGCGTGCAGCACAAACTGATCGAGAAGTCCGGCGCCTGGTATGCATACA
AAGGCGACAAAATCGGCCAGGGCAAGGATAACGCGCGCGAATTTCTAAAAGAACACCCCGAGATAGCGGCGGAAATCGAA
TCGAAAATACGCGCCGCGGTGGGCGTCGCCAACCCCGCTGAAACGGCCGCCGTGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

72.464

100

0.737
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.464

100

0.737
  recA Pseudomonas stutzeri DSM 10701

76

95.87

0.729
  recA Neisseria gonorrhoeae MS11

74.164

97.05

0.72
  recA Neisseria gonorrhoeae MS11

74.164

97.05

0.72
  recA Neisseria gonorrhoeae strain FA1090

74.164

97.05

0.72
  recA Ralstonia pseudosolanacearum GMI1000

77.389

92.625

0.717
  recA Acinetobacter baylyi ADP1

71.81

99.41

0.714
  recA Acinetobacter baumannii D1279779

73.765

95.575

0.705
  recA Glaesserella parasuis strain SC1401

72.121

97.345

0.702
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

96.755

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

97.345

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

63.72

96.755

0.617
  recA Streptococcus mutans UA159

62.538

97.64

0.611
  recA Streptococcus pneumoniae D39

61.607

99.115

0.611
  recA Streptococcus pneumoniae TIGR4

61.607

99.115

0.611
  recA Streptococcus pneumoniae R6

61.607

99.115

0.611
  recA Streptococcus pneumoniae Rx1

61.607

99.115

0.611
  recA Streptococcus mitis SK321

61.31

99.115

0.608
  recA Streptococcus mitis NCTC 12261

61.31

99.115

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

62.048

97.935

0.608
  recA Streptococcus pyogenes NZ131

62.121

97.345

0.605
  recA Helicobacter pylori 26695

62.006

97.05

0.602
  recA Lactococcus lactis subsp. cremoris KW2

60.714

99.115

0.602
  recA Helicobacter pylori strain NCTC11637

61.702

97.05

0.599
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.515

97.345

0.599