Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RYJ27_RS03725 Genome accession   NZ_CP137080
Coordinates   770069..771118 (+) Length   349 a.a.
NCBI ID   WP_330171411.1    Uniprot ID   -
Organism   Microbacterium limosum strain Y20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 765069..776118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYJ27_RS03700 (RYJ27_03695) crtI 765156..766730 (-) 1575 WP_330171406.1 phytoene desaturase family protein -
  RYJ27_RS03705 (RYJ27_03700) - 766727..767626 (-) 900 WP_330171407.1 squalene/phytoene synthase family protein -
  RYJ27_RS03710 (RYJ27_03705) - 767623..768696 (-) 1074 WP_330171408.1 polyprenyl synthetase family protein -
  RYJ27_RS03715 (RYJ27_03710) idi 768693..769250 (-) 558 WP_330171409.1 isopentenyl-diphosphate Delta-isomerase -
  RYJ27_RS03720 (RYJ27_03715) - 769338..769787 (+) 450 WP_330171410.1 MarR family transcriptional regulator -
  RYJ27_RS03725 (RYJ27_03720) recA 770069..771118 (+) 1050 WP_330171411.1 recombinase RecA Machinery gene
  RYJ27_RS03730 (RYJ27_03725) - 771118..771831 (+) 714 WP_330171412.1 regulatory protein RecX -
  RYJ27_RS03735 (RYJ27_03730) miaB 771898..773445 (+) 1548 WP_330171413.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  RYJ27_RS03740 (RYJ27_03735) miaA 773445..774371 (+) 927 WP_330171977.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  RYJ27_RS03745 (RYJ27_03740) dapF 774416..775285 (+) 870 WP_330171414.1 diaminopimelate epimerase -
  RYJ27_RS03750 (RYJ27_03745) - 775325..775969 (-) 645 WP_330171415.1 methyltransferase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37381.81 Da        Isoelectric Point: 6.5180

>NTDB_id=894874 RYJ27_RS03725 WP_330171411.1 770069..771118(+) (recA) [Microbacterium limosum strain Y20]
MPTPADREKALESALAQIDRQFGKGSVMRLGSDDRAPVEVIQTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYARKLGVDIDQLLVSQPDTGEQALEIADMLIRSGSIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTGTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFLLKNTDVAADI
EQKIKQKLGIGVPKALAPVDADVPVKRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=894874 RYJ27_RS03725 WP_330171411.1 770069..771118(+) (recA) [Microbacterium limosum strain Y20]
ATGCCCACACCCGCCGACCGCGAGAAGGCCCTCGAATCGGCCCTCGCTCAGATCGACCGGCAGTTCGGGAAGGGCTCGGT
CATGCGGCTGGGCAGCGACGATCGGGCGCCCGTGGAGGTCATCCAGACCGGCTCCATCGCCCTGGACGTCGCGCTCGGCG
TGGGCGGCCTGCCCCGAGGGCGCATCATCGAGATCTACGGTCCGGAGTCTTCGGGCAAGACGACCCTGACGCTGCATGCC
ATCGCCAATGCGCAGCGTGCCGGCGGCATCGCCGCGTTCATCGACGCCGAGCACGCGCTCGACCCGGAGTACGCACGCAA
GCTCGGCGTCGACATCGACCAGCTGCTGGTCTCCCAGCCCGATACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCA
TCCGCTCGGGCTCGATCGACCTCATCGTGATCGACTCCGTGGCCGCCCTCGTGCCGCGGGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTGGGTCTGCAGGCGCGACTGATGTCGCAGGCGCTGCGCAAGCTCACCGGTGGGCTCAACCAGACCGG
CACCACGATGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGTTCTTCGGCTCTCCCGAGACCACGGCCGGCGGTA
AGGCGCTCAAGTTCTACGCGTCCGTCCGCCTCGACATCCGTCGCATCGAGACGCTAAAGGACGGATCGGATGCCGTCGGC
AACCGCACGCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCAC
CGGTATCTCGCGCGAGGGCAGCCTCATCGACTTCGGCGTAGAGCACGCGATCGTGAAGAAGTCGGGCGCCTGGTACACGT
ACGACGGCGAGCAGCTCGGGCAGGGCAAGGAGAACGCGCGCAACTTCCTGCTCAAGAACACCGACGTCGCCGCCGACATC
GAACAGAAGATCAAGCAGAAGCTCGGCATCGGCGTGCCCAAGGCGCTCGCCCCCGTCGACGCCGACGTGCCGGTCAAGCG
CCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

67.183

92.55

0.622
  recA Ralstonia pseudosolanacearum GMI1000

69.01

89.685

0.619
  recA Pseudomonas stutzeri DSM 10701

66.873

92.55

0.619
  recA Neisseria gonorrhoeae MS11

65.951

93.41

0.616
  recA Neisseria gonorrhoeae MS11

65.951

93.41

0.616
  recA Neisseria gonorrhoeae strain FA1090

65.951

93.41

0.616
  recA Acinetobacter baylyi ADP1

66.563

92.55

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

92.55

0.61
  recA Vibrio cholerae strain A1552

65.944

92.55

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

93.41

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

62.13

96.848

0.602
  recA Lactococcus lactis subsp. cremoris KW2

62.424

94.556

0.59
  recA Helicobacter pylori 26695

62.121

94.556

0.587
  recA Helicobacter pylori strain NCTC11637

62.121

94.556

0.587
  recA Streptococcus mitis SK321

62.121

94.556

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.577

93.41

0.585
  recA Glaesserella parasuis strain SC1401

62.462

93.123

0.582
  recA Streptococcus pneumoniae R6

61.515

94.556

0.582
  recA Streptococcus pneumoniae Rx1

61.515

94.556

0.582
  recA Streptococcus pneumoniae D39

61.515

94.556

0.582
  recA Streptococcus pneumoniae TIGR4

61.515

94.556

0.582
  recA Streptococcus mitis NCTC 12261

61.515

94.556

0.582
  recA Streptococcus mutans UA159

61.094

94.269

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

94.269

0.576
  recA Streptococcus pyogenes NZ131

61.28

93.983

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.692

93.123

0.556