Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R2X36_RS02495 Genome accession   NZ_CP137009
Coordinates   505085..506146 (+) Length   353 a.a.
NCBI ID   WP_005324574.1    Uniprot ID   A0A0K0MJA3
Organism   Aeromonas media strain QST31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500085..511146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2X36_RS02480 (R2X36_02480) mutS 501026..503596 (-) 2571 WP_317841869.1 DNA mismatch repair protein MutS -
  R2X36_RS02485 (R2X36_02485) - 503860..504267 (-) 408 WP_317841870.1 Spy/CpxP family protein refolding chaperone -
  R2X36_RS02490 (R2X36_02490) pncC 504513..505004 (+) 492 WP_041207091.1 nicotinamide-nucleotide amidase -
  R2X36_RS02495 (R2X36_02495) recA 505085..506146 (+) 1062 WP_005324574.1 recombinase RecA Machinery gene
  R2X36_RS02500 (R2X36_02500) - 506187..506687 (+) 501 WP_317841871.1 regulatory protein RecX -
  R2X36_RS02505 (R2X36_02505) alaS 506966..509590 (+) 2625 WP_317841872.1 alanine--tRNA ligase -
  R2X36_RS02510 (R2X36_02510) - 509607..510854 (+) 1248 WP_005332431.1 aspartate kinase -
  R2X36_RS02515 (R2X36_02515) csrA 510948..511136 (+) 189 WP_005315760.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37944.71 Da        Isoelectric Point: 4.9743

>NTDB_id=894211 R2X36_RS02495 WP_005324574.1 505085..506146(+) (recA) [Aeromonas media strain QST31]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKVMAAEVEA
RLRELLLSGAVPVEKPVAAVAEEFEDESEQEFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=894211 R2X36_RS02495 WP_005324574.1 505085..506146(+) (recA) [Aeromonas media strain QST31]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCACTTTCCCTGGACGTGGCGCTGGGCATCGGTG
GTCTGCCGTGCGGTCGCATCGTCGAGATCTACGGTCCGGAATCGTCAGGCAAAACCACCCTCACCCTGCAGGTGATCGCG
GAAGCCCAGAAGAAAGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCGCTGGATCCCATCTATGCCGCCAAACTGGG
GGTCAACGTCGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAACAGGCGCTGGAGATCTGCGACATGCTGGTGCGCT
CCAACGCTGTTGACGTCATCATCGTCGACTCGGTGGCAGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAGATGGGGGAT
TCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGCTGACCGCCAACATCAAGAATGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGACCACCACGGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGTCTGGATATCCGTCGCATCGGTGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCCGAGTTCCAGATCTTCTACGGTGCCGGCAT
CTCCAAAGAGGGCGAACTGGTGGACTTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGCGCCTGGTACAGCTACAACG
GCGAGAAGATCGGCCAGGGCAAGGCCAACGTGATGAAGCTGTTCGCCGAGAACAAGGTGATGGCTGCCGAGGTGGAAGCC
CGCCTGCGTGAGCTGCTGCTCTCTGGCGCCGTGCCGGTCGAGAAGCCGGTGGCTGCGGTCGCCGAAGAGTTTGAAGACGA
AAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MJA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.171

96.034

0.751
  recA Vibrio cholerae strain A1552

78.659

92.918

0.731
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

92.918

0.731
  recA Acinetobacter baumannii D1279779

73.669

95.751

0.705
  recA Glaesserella parasuis strain SC1401

71.06

98.867

0.703
  recA Acinetobacter baylyi ADP1

73.939

93.484

0.691
  recA Ralstonia pseudosolanacearum GMI1000

72.289

94.051

0.68
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.351

0.663
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.768

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.368

0.592
  recA Helicobacter pylori strain NCTC11637

63.692

92.068

0.586
  recA Helicobacter pylori 26695

63.077

92.068

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.935

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

60.909

93.484

0.569
  recA Streptococcus pneumoniae TIGR4

61.61

91.501

0.564
  recA Streptococcus pneumoniae Rx1

61.61

91.501

0.564
  recA Streptococcus pneumoniae D39

61.61

91.501

0.564
  recA Streptococcus pneumoniae R6

61.61

91.501

0.564
  recA Streptococcus mitis SK321

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

92.918

0.561
  recA Streptococcus mitis NCTC 12261

61.3

91.501

0.561
  recA Streptococcus mutans UA159

60.372

91.501

0.552
  recA Streptococcus pyogenes NZ131

60.062

91.501

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.501

0.53