Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | R0Q54_RS19930 | Genome accession | NZ_CP136992 |
| Coordinates | 3761017..3762063 (+) | Length | 348 a.a. |
| NCBI ID | WP_003245789.1 | Uniprot ID | A0A199WHQ8 |
| Organism | Bacillus subtilis strain J46 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3754684..3807987 | 3761017..3762063 | within | 0 |
Gene organization within MGE regions
Location: 3754684..3807987
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R0Q54_RS19895 (R0Q54_19895) | yfmH | 3754684..3755970 (+) | 1287 | WP_003244823.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| R0Q54_RS19900 (R0Q54_19900) | ymfI | 3756025..3756753 (+) | 729 | WP_003244676.1 | elongation factor P 5-aminopentanone reductase | - |
| R0Q54_RS19905 (R0Q54_19905) | ymfJ | 3756834..3757091 (+) | 258 | WP_003245199.1 | DUF3243 domain-containing protein | - |
| R0Q54_RS19910 (R0Q54_19910) | - | 3757221..3758012 (+) | 792 | WP_003220998.1 | DUF3388 domain-containing protein | - |
| R0Q54_RS19915 (R0Q54_19915) | rodZ | 3758031..3758945 (+) | 915 | WP_014479813.1 | cell shape determination protein RodZ | - |
| R0Q54_RS19920 (R0Q54_19920) | pgsA | 3758995..3759576 (+) | 582 | WP_014479814.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| R0Q54_RS19925 (R0Q54_19925) | cinA | 3759594..3760844 (+) | 1251 | WP_003231847.1 | competence/damage-inducible protein A | Machinery gene |
| R0Q54_RS19930 (R0Q54_19930) | recA | 3761017..3762063 (+) | 1047 | WP_003245789.1 | recombinase RecA | Machinery gene |
| R0Q54_RS19935 (R0Q54_19935) | pbpX | 3762230..3763405 (+) | 1176 | WP_014479815.1 | serine hydrolase domain-containing protein | - |
| R0Q54_RS19940 (R0Q54_19940) | rny | 3763681..3765243 (+) | 1563 | WP_003221010.1 | ribonuclease Y | - |
| R0Q54_RS19945 (R0Q54_19945) | ymdB | 3765312..3766106 (+) | 795 | WP_014479816.1 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | - |
| R0Q54_RS19950 (R0Q54_19950) | spoVS | 3766306..3766566 (+) | 261 | WP_003154135.1 | stage V sporulation protein SpoVS | - |
| R0Q54_RS19955 (R0Q54_19955) | tdh | 3766831..3767874 (+) | 1044 | WP_014479818.1 | L-threonine 3-dehydrogenase | - |
| R0Q54_RS19960 (R0Q54_19960) | kbl | 3767887..3769065 (+) | 1179 | WP_014479819.1 | glycine C-acetyltransferase | - |
| R0Q54_RS19965 (R0Q54_19965) | miaB | 3769213..3770742 (+) | 1530 | WP_014664026.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| R0Q54_RS19970 (R0Q54_19970) | ricA | 3770744..3771175 (+) | 432 | WP_003231834.1 | regulatory iron-sulfur-containing complex subunit RicA | - |
| R0Q54_RS19975 (R0Q54_19975) | cotE | 3771437..3771982 (+) | 546 | WP_003231833.1 | outer spore coat protein CotE | - |
| R0Q54_RS19980 (R0Q54_19980) | mutS | 3772115..3774691 (+) | 2577 | WP_046160418.1 | DNA mismatch repair protein MutS | - |
| R0Q54_RS19985 (R0Q54_19985) | mutL | 3774707..3776590 (+) | 1884 | WP_069964159.1 | DNA mismatch repair endonuclease MutL | - |
| R0Q54_RS19990 (R0Q54_19990) | - | 3777026..3777109 (+) | 84 | WP_235091748.1 | XtrA/YqaO family protein | - |
| R0Q54_RS19995 (R0Q54_19995) | - | 3777152..3777403 (+) | 252 | Protein_3881 | VWA domain-containing protein | - |
| R0Q54_RS20000 (R0Q54_20000) | - | 3777700..3777948 (+) | 249 | WP_031600520.1 | hypothetical protein | - |
| R0Q54_RS20005 (R0Q54_20005) | - | 3777999..3778361 (-) | 363 | WP_033881685.1 | Ig-like domain-containing protein | - |
| R0Q54_RS20010 (R0Q54_20010) | istB | 3778578..3779336 (-) | 759 | WP_014479891.1 | IS21-like element helper ATPase IstB | - |
| R0Q54_RS20015 (R0Q54_20015) | istA | 3779333..3780880 (-) | 1548 | WP_014480339.1 | IS21 family transposase | - |
| R0Q54_RS20020 (R0Q54_20020) | - | 3781266..3782513 (+) | 1248 | WP_031600262.1 | IS256-like element ISBsu2 family transposase | - |
| R0Q54_RS20025 (R0Q54_20025) | - | 3782662..3783246 (+) | 585 | WP_214283034.1 | hypothetical protein | - |
| R0Q54_RS20030 (R0Q54_20030) | - | 3783483..3783893 (+) | 411 | Protein_3888 | ArpU family phage packaging/lysis transcriptional regulator | - |
| R0Q54_RS20035 (R0Q54_20035) | - | 3783893..3784422 (+) | 530 | Protein_3889 | tyrosine-type recombinase/integrase | - |
| R0Q54_RS20040 (R0Q54_20040) | - | 3784692..3784844 (+) | 153 | WP_162175547.1 | hypothetical protein | - |
| R0Q54_RS20045 (R0Q54_20045) | - | 3785172..3785321 (+) | 150 | WP_031600526.1 | hypothetical protein | - |
| R0Q54_RS20050 (R0Q54_20050) | - | 3785390..3785707 (+) | 318 | WP_033881687.1 | hypothetical protein | - |
| R0Q54_RS20055 (R0Q54_20055) | - | 3785883..3786032 (+) | 150 | WP_236824261.1 | hypothetical protein | - |
| R0Q54_RS20060 (R0Q54_20060) | - | 3786117..3786731 (+) | 615 | WP_033881688.1 | hypothetical protein | - |
| R0Q54_RS20065 (R0Q54_20065) | - | 3786744..3786968 (+) | 225 | WP_033881690.1 | hypothetical protein | - |
| R0Q54_RS20070 (R0Q54_20070) | - | 3786965..3787339 (+) | 375 | WP_041516434.1 | HNH endonuclease signature motif containing protein | - |
| R0Q54_RS20075 (R0Q54_20075) | - | 3787234..3787647 (+) | 414 | WP_224588978.1 | hypothetical protein | - |
| R0Q54_RS20080 (R0Q54_20080) | - | 3787719..3788252 (+) | 534 | WP_017697674.1 | phage terminase small subunit P27 family | - |
| R0Q54_RS20085 (R0Q54_20085) | - | 3788252..3788419 (+) | 168 | WP_031600532.1 | hypothetical protein | - |
| R0Q54_RS20090 (R0Q54_20090) | - | 3788503..3789750 (-) | 1248 | WP_031600262.1 | IS256-like element ISBsu2 family transposase | - |
| R0Q54_RS20095 (R0Q54_20095) | ymzD | 3790797..3791252 (-) | 456 | WP_069964161.1 | regulatory YrvL family protein | - |
| R0Q54_RS20100 (R0Q54_20100) | - | 3791498..3792850 (+) | 1353 | WP_069964227.1 | IS1182 family transposase | - |
| R0Q54_RS20105 (R0Q54_20105) | - | 3792992..3793549 (-) | 558 | WP_017694906.1 | hypothetical protein | - |
| R0Q54_RS20110 (R0Q54_20110) | pksA | 3793670..3794284 (+) | 615 | WP_069964162.1 | TetR/AcrR family transcriptional regulator | - |
| R0Q54_RS20115 (R0Q54_20115) | - | 3794420..3794776 (-) | 357 | WP_003231786.1 | hypothetical protein | - |
| R0Q54_RS20120 (R0Q54_20120) | ymaE | 3794855..3795679 (-) | 825 | WP_072592535.1 | MBL fold metallo-hydrolase | - |
| R0Q54_RS20125 (R0Q54_20125) | aprX | 3795790..3797118 (-) | 1329 | WP_033881122.1 | serine protease AprX | - |
| R0Q54_RS20130 (R0Q54_20130) | - | 3797343..3797576 (+) | 234 | WP_014476869.1 | hypothetical protein | - |
| R0Q54_RS20135 (R0Q54_20135) | pghC | 3797856..3798563 (+) | 708 | WP_014479835.1 | poly-gamma-glutamate hydrolase family protein | - |
| R0Q54_RS20140 (R0Q54_20140) | ymaD | 3798633..3799085 (+) | 453 | WP_014479836.1 | OsmC family protein | - |
| R0Q54_RS20145 (R0Q54_20145) | ebrB | 3799099..3799452 (-) | 354 | WP_014479837.1 | multidrug efflux SMR transporter subunit EbrB | - |
| R0Q54_RS20150 (R0Q54_20150) | ebrA | 3799466..3799783 (-) | 318 | WP_009967307.1 | multidrug efflux SMR transporter subunit EbrA | - |
| R0Q54_RS20155 (R0Q54_20155) | - | 3799918..3800196 (-) | 279 | WP_014479838.1 | hypothetical protein | - |
| R0Q54_RS20160 (R0Q54_20160) | ymaF | 3800285..3800698 (+) | 414 | WP_072592536.1 | YmaF family protein | - |
| R0Q54_RS20165 (R0Q54_20165) | miaA | 3800798..3801742 (+) | 945 | WP_014479840.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| R0Q54_RS20170 (R0Q54_20170) | hfq | 3801782..3802003 (+) | 222 | WP_003221097.1 | RNA chaperone Hfq | - |
| R0Q54_RS20175 (R0Q54_20175) | ymzC | 3802198..3802470 (+) | 273 | WP_014479841.1 | YmzC family protein | - |
| R0Q54_RS20180 (R0Q54_20180) | - | 3802552..3802782 (+) | 231 | WP_003245262.1 | hypothetical protein | - |
| R0Q54_RS20185 (R0Q54_20185) | nrdI | 3803025..3803417 (+) | 393 | WP_003231758.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| R0Q54_RS20190 (R0Q54_20190) | nrdE | 3803377..3805479 (+) | 2103 | WP_014479842.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| R0Q54_RS20195 (R0Q54_20195) | nrdF | 3805497..3806486 (+) | 990 | WP_003231754.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| R0Q54_RS20200 (R0Q54_20200) | - | 3806536..3807156 (+) | 621 | WP_003245105.1 | hypothetical protein | - |
| R0Q54_RS20205 (R0Q54_20205) | cwlC | 3807220..3807987 (-) | 768 | WP_014479843.1 | sporulation-specific N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 38059.21 Da Isoelectric Point: 4.7315
>NTDB_id=894085 R0Q54_RS19930 WP_003245789.1 3761017..3762063(+) (recA) [Bacillus subtilis strain J46]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=894085 R0Q54_RS19930 WP_003245789.1 3761017..3762063(+) (recA) [Bacillus subtilis strain J46]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAGGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCT
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAGGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCT
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.