Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R3J28_RS00445 Genome accession   NZ_CP136971
Coordinates   117400..118443 (+) Length   347 a.a.
NCBI ID   WP_012337558.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain Santa29b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112400..123443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J28_RS00430 (R3J28_00430) - 113284..114312 (-) 1029 WP_004085534.1 right-handed parallel beta-helix repeat-containing protein -
  R3J28_RS00435 (R3J28_00435) - 115079..116110 (+) 1032 WP_004085533.1 nitronate monooxygenase family protein -
  R3J28_RS00440 (R3J28_00440) lexA 116583..117218 (+) 636 WP_004085532.1 transcriptional repressor LexA -
  R3J28_RS00445 (R3J28_00445) recA 117400..118443 (+) 1044 WP_012337558.1 recombinase RecA Machinery gene
  R3J28_RS00450 (R3J28_00450) alaS 118932..121586 (+) 2655 WP_004085530.1 alanine--tRNA ligase -
  R3J28_RS00455 (R3J28_00455) csrA 121725..121940 (+) 216 WP_004085529.1 carbon storage regulator CsrA -
  R3J28_RS00465 (R3J28_00465) - 122835..122963 (-) 129 WP_021358308.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37566.27 Da        Isoelectric Point: 5.0879

>NTDB_id=893887 R3J28_RS00445 WP_012337558.1 117400..118443(+) (recA) [Xylella fastidiosa subsp. multiplex strain Santa29b]
MDENKKRALSVALSQIEKQFGKGSVMRMGDRVIEAVEAIPTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQGKDNARGYLRENPHLAAKL
EADLREKFEPTELSREEGDEDTLEDAM

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=893887 R3J28_RS00445 WP_012337558.1 117400..118443(+) (recA) [Xylella fastidiosa subsp. multiplex strain Santa29b]
ATGGATGAGAACAAGAAACGCGCCCTTTCTGTCGCTTTAAGCCAGATTGAAAAACAGTTCGGCAAGGGGTCTGTGATGCG
GATGGGCGATCGCGTGATCGAAGCCGTAGAGGCGATCCCGACAGGTTCGCTCATGTTGGATCTGGCCTTGGGGATAGGTG
GTTTGCCAAAGGGACGTGTCGTGGAAATCTATGGGCCGGAATCTTCTGGGAAGACCACATTGACTTTGCAGGCGATCGCT
CAATGCCAGAAGAAGGGAGGTACAGCAGCGTTCATTGATGCTGAGCATGCCTTGGATCCGATTTATGCGGGCAAGTTAGG
CGTCAATGTTGATGATTTGTTGTTGTCTCAGCCAGATACTGGGGAGCAGGCTCTGGAAATCGCTGACATGCTGGTGCGCT
CGGGGTCAATCGATATCATGGTTATTGATTCGGTTGCGGCACTCACGCCAAAGGCGGAGATTGAGGGTGAGATGGGAGAT
CAGTTGCCCGGTCTTCAGGCGCGATTGATGAGCCAGGCGCTGCGTAAATTGACCGGCAATATCAAGCGCTCTAATACGCT
GGTGATTTTTATAAACCAGTTGCGTATGAAAATTGGGATCATGATGCCGGGTCAAAGCCCTGAAACTACGACAGGGGGTA
ATGCGCTGAAGTTCTATGCTTCAGTGCGTTTGGATATTCGCCGTATTGGCGCGATCAAGAAGGGTGACGAAATTATCGGG
AATCAAACCAAAATCAAGGTTGTTAAAAACAAGTTGGCGCCTCCCTTCAAACAAGTCGTGACTGAGATTCTCTATGGTGA
AGGCATCAGTCGTGAAGGGGAATTGATTGAAATGGGCGTGGAGGCCAAGTTGGTTGAGAAAGCCGGCGCTTGGTATAGCT
ATGGTGGTGAGCGGATCGGGCAAGGAAAAGATAATGCGCGTGGCTATCTACGCGAAAACCCGCATCTTGCGGCCAAGCTT
GAGGCTGATTTGCGTGAGAAATTTGAGCCGACCGAGCTTTCTCGAGAAGAGGGCGATGAAGATACGCTCGAAGATGCAAT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.333

95.101

0.697
  recA Acinetobacter baylyi ADP1

72.866

94.524

0.689
  recA Acinetobacter baumannii D1279779

71.903

95.389

0.686
  recA Pseudomonas stutzeri DSM 10701

71.951

94.524

0.68
  recA Vibrio cholerae strain A1552

70.552

93.948

0.663
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

93.948

0.663
  recA Neisseria gonorrhoeae MS11

66.374

98.559

0.654
  recA Neisseria gonorrhoeae MS11

66.374

98.559

0.654
  recA Neisseria gonorrhoeae strain FA1090

66.374

98.559

0.654
  recA Glaesserella parasuis strain SC1401

68.421

93.084

0.637
  recA Helicobacter pylori strain NCTC11637

62.048

95.677

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.377

96.254

0.591
  recA Helicobacter pylori 26695

61.446

95.677

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.75

92.219

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

58.892

98.847

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

93.66

0.579
  recA Streptococcus mutans UA159

59.697

95.101

0.568
  recA Streptococcus pneumoniae D39

60.061

94.524

0.568
  recA Streptococcus pneumoniae Rx1

60.061

94.524

0.568
  recA Streptococcus pneumoniae R6

60.061

94.524

0.568
  recA Streptococcus pneumoniae TIGR4

60.061

94.524

0.568
  recA Streptococcus pyogenes NZ131

59.394

95.101

0.565
  recA Streptococcus mitis SK321

59.451

94.524

0.562
  recA Streptococcus mitis NCTC 12261

59.146

94.524

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

93.948

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.462

93.66

0.548