Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R2R35_RS00010 Genome accession   NZ_CP136910
Coordinates   2281..3327 (+) Length   348 a.a.
NCBI ID   WP_317732458.1    Uniprot ID   -
Organism   Anaerocolumna sp. AGMB13020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..8327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2R35_RS00005 (R2R35_00005) ilvA 1..1221 (+) 1221 WP_317732457.1 threonine ammonia-lyase -
  R2R35_RS00010 (R2R35_00010) recA 2281..3327 (+) 1047 WP_317732458.1 recombinase RecA Machinery gene
  R2R35_RS00015 (R2R35_00015) - 3330..3923 (+) 594 WP_317732459.1 regulatory protein RecX -
  R2R35_RS00020 (R2R35_00020) - 4190..5371 (-) 1182 WP_317730199.1 ISL3 family transposase -
  R2R35_RS00025 (R2R35_00025) - 5878..6846 (+) 969 WP_317732460.1 glycosyl hydrolase family 53 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37622.10 Da        Isoelectric Point: 6.1740

>NTDB_id=893397 R2R35_RS00010 WP_317732458.1 2281..3327(+) (recA) [Anaerocolumna sp. AGMB13020]
MSKEDKSRALESALAQIEKQYGKGSVMKLGDTAAHMNIETIPTGSISLDVALGLGGIPKGRIVEIYGPESSGKTTVALHM
VAEVQKIGGIAGFIDAEHALDPVYAKRIGVDIDNLYISQPDNGEQALEITETMVRSGAVDIIIVDSVAALVPRAEIDGDM
GDSHVGLQARLMSQALRKLTAAISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRKIEALKQGGDIVG
SRTRIKVVKNKVAPPFKEAEFDIMFGQGISREGDVLDLASNENIVIKSGAWYAYNEAKIGQGRENAKQFLKENPTIFAEI
ELKVRDKYNLSIVSATNKKETAAKEADE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=893397 R2R35_RS00010 WP_317732458.1 2281..3327(+) (recA) [Anaerocolumna sp. AGMB13020]
ATGTCAAAAGAAGATAAGAGCAGAGCGCTGGAATCCGCATTGGCGCAGATTGAGAAACAGTACGGAAAAGGCTCCGTTAT
GAAACTTGGTGATACGGCTGCCCATATGAACATAGAAACTATACCCACCGGATCTATCAGCTTGGACGTTGCCTTGGGCT
TGGGCGGTATACCCAAGGGGAGAATCGTTGAAATATATGGACCGGAATCCAGTGGTAAGACTACGGTTGCTCTTCACATG
GTTGCAGAAGTGCAAAAAATTGGTGGAATTGCCGGATTTATCGATGCGGAGCATGCTTTGGACCCTGTCTATGCGAAAAG
AATCGGAGTAGATATCGATAATCTCTACATATCCCAGCCTGACAATGGGGAACAAGCCTTAGAAATTACAGAAACAATGG
TTCGTTCCGGTGCAGTGGATATAATTATTGTCGATTCCGTGGCTGCGTTGGTACCAAGAGCAGAAATTGATGGAGATATG
GGTGATTCTCATGTAGGCTTACAAGCCAGGTTAATGTCCCAGGCGCTTCGTAAATTAACAGCTGCTATCAGCAAATCCAA
TTGTATTGTAATTTTTATCAACCAGCTTCGTGAAAAGGTTGGTGTAATGTTTGGAAATCCTGAGACAACTACTGGTGGAC
GTGCTCTTAAGTTCTATTCTTCCATTCGTTTGGATGTTCGTAAAATTGAAGCATTGAAGCAGGGTGGAGATATTGTCGGA
AGCAGAACACGTATAAAGGTAGTTAAGAACAAGGTTGCGCCTCCTTTTAAAGAAGCGGAGTTTGATATTATGTTCGGACA
GGGTATTTCCAGAGAAGGTGATGTTTTAGACCTGGCTTCCAATGAGAATATTGTCATTAAGAGTGGTGCGTGGTATGCCT
ATAATGAGGCTAAGATTGGACAGGGGCGTGAAAATGCCAAACAATTTTTAAAAGAAAATCCTACGATATTTGCTGAGATT
GAATTAAAAGTTAGAGACAAATATAATTTGTCCATTGTATCAGCAACAAATAAGAAGGAAACAGCCGCTAAGGAAGCAGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.325

93.678

0.649
  recA Streptococcus pneumoniae R6

62.678

100

0.632
  recA Streptococcus pneumoniae Rx1

62.678

100

0.632
  recA Streptococcus pneumoniae D39

62.678

100

0.632
  recA Streptococcus pneumoniae TIGR4

62.678

100

0.632
  recA Streptococcus mutans UA159

62.857

100

0.632
  recA Glaesserella parasuis strain SC1401

63.112

99.713

0.629
  recA Pseudomonas stutzeri DSM 10701

62.573

98.276

0.615
  recA Streptococcus mitis SK321

64.545

94.828

0.612
  recA Streptococcus mitis NCTC 12261

64.545

94.828

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

63.363

95.69

0.606
  recA Lactococcus lactis subsp. cremoris KW2

63.939

94.828

0.606
  recA Streptococcus pyogenes NZ131

63.83

94.54

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.13

97.126

0.603
  recA Vibrio cholerae strain A1552

62.13

97.126

0.603
  recA Acinetobacter baumannii D1279779

61.976

95.977

0.595
  recA Neisseria gonorrhoeae strain FA1090

63.975

92.529

0.592
  recA Neisseria gonorrhoeae MS11

63.975

92.529

0.592
  recA Neisseria gonorrhoeae MS11

63.975

92.529

0.592
  recA Acinetobacter baylyi ADP1

63.272

93.103

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.151

91.379

0.586
  recA Ralstonia pseudosolanacearum GMI1000

61.145

95.402

0.583
  recA Helicobacter pylori strain NCTC11637

62.654

93.103

0.583
  recA Helicobacter pylori 26695

62.346

93.103

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

94.54

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.394

94.828

0.563