Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R0137_RS09035 Genome accession   NZ_CP136865
Coordinates   2044694..2045749 (+) Length   351 a.a.
NCBI ID   WP_407326092.1    Uniprot ID   -
Organism   Congregibacter brevis strain IMCC45268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2039694..2050749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0137_RS09025 (R0137_08990) - 2041835..2043313 (+) 1479 WP_407326090.1 glutamate--cysteine ligase -
  R0137_RS09030 (R0137_08995) - 2043342..2044361 (+) 1020 WP_407326091.1 M14 family metallopeptidase -
  R0137_RS09035 (R0137_09000) recA 2044694..2045749 (+) 1056 WP_407326092.1 recombinase RecA Machinery gene
  R0137_RS09040 (R0137_09005) - 2045990..2046379 (+) 390 WP_407326093.1 regulatory protein RecX -
  R0137_RS09045 (R0137_09010) uxuA 2046424..2047626 (-) 1203 WP_407326094.1 mannonate dehydratase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37325.57 Da        Isoelectric Point: 4.7301

>NTDB_id=893185 R0137_RS09035 WP_407326092.1 2044694..2045749(+) (recA) [Congregibacter brevis strain IMCC45268]
MNANKEKALEAALGQIDRQFGKGTVMRMGDSDRVAIPSISTGSLGLDVALGIGGLPKGRICEIFGPESSGKTTLTLQVIA
EAQKAGGTAAFIDAEHALDPIYAEKLGVQIDDLIVSQPDTGEQALEVAEMLVRSGAVDVLVVDSVAALTPRAEIEGDMGD
SHVGLQARLLSQAMRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLSLIDKSGAWYAYKGDKIGQGKANAAKFLEDNPALGSEIEG
LIRAQLLDVGSKDDDDAALEGEEGAESKASD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=893185 R0137_RS09035 WP_407326092.1 2044694..2045749(+) (recA) [Congregibacter brevis strain IMCC45268]
ATGAACGCAAATAAAGAAAAGGCACTCGAAGCGGCTCTAGGCCAAATCGATCGTCAATTCGGTAAGGGTACCGTCATGCG
CATGGGAGATAGTGATCGCGTTGCAATCCCATCGATTTCTACGGGGTCGCTTGGCCTGGACGTCGCGCTAGGCATTGGTG
GTCTTCCCAAAGGGCGAATCTGCGAAATCTTTGGTCCGGAGTCATCGGGTAAAACCACACTGACCCTGCAAGTCATTGCT
GAGGCTCAAAAAGCGGGTGGTACAGCGGCTTTTATCGACGCTGAGCACGCTCTGGATCCAATTTACGCCGAAAAGCTAGG
CGTGCAGATTGATGATCTGATTGTTTCGCAGCCAGATACTGGAGAGCAGGCACTGGAAGTTGCTGAAATGCTTGTACGCT
CCGGTGCTGTCGATGTGCTGGTAGTTGACTCTGTAGCTGCGCTGACGCCTCGAGCGGAAATCGAAGGTGATATGGGGGAT
TCGCACGTTGGTCTACAGGCACGACTGCTCAGTCAGGCGATGCGCAAGCTCACGGCGACAATCAAGCAAACGAATTGTCT
GGTGATCTTTATTAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGCTCGCCCGAAACCACTACTGGTGGTAATGCCC
TCAAGTTCTACTCGTCTGTACGACTCGATATCCGCCGTATTGGGGCGGTCAAAGAAGGCGACGAGGTGGTGGGTAACGAA
ACGCGTGTCAAAGTCGTGAAAAACAAAGTGGCGCCACCCTTCAAACAGGCGGAATTCCAGATTATGTACGGCCGGGGTAT
TTATCGCACCGCAGAAGTTATTGACTGGGGCGTGAAGCTAAGCCTCATCGACAAGTCTGGAGCGTGGTATGCCTATAAAG
GCGACAAGATTGGTCAGGGCAAAGCTAACGCTGCGAAGTTCCTCGAGGACAACCCAGCGCTCGGTAGCGAGATCGAGGGA
TTGATTCGCGCGCAATTGCTGGACGTAGGTTCCAAGGATGACGACGACGCTGCTCTTGAAGGCGAAGAGGGTGCAGAGAG
CAAAGCAAGCGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.817

93.162

0.744
  recA Acinetobacter baylyi ADP1

69.971

97.721

0.684
  recA Vibrio cholerae strain A1552

71.951

93.447

0.672
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.951

93.447

0.672
  recA Acinetobacter baumannii D1279779

70.695

94.302

0.667
  recA Neisseria gonorrhoeae MS11

69.231

92.593

0.641
  recA Neisseria gonorrhoeae MS11

69.231

92.593

0.641
  recA Neisseria gonorrhoeae strain FA1090

69.231

92.593

0.641
  recA Glaesserella parasuis strain SC1401

69.565

91.738

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.793

99.145

0.632
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.604

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

94.302

0.604
  recA Streptococcus mitis SK321

59.429

99.715

0.593
  recA Streptococcus mitis NCTC 12261

59.429

99.715

0.593
  recA Streptococcus pyogenes NZ131

57.423

100

0.584
  recA Helicobacter pylori strain NCTC11637

63.636

90.883

0.578
  recA Helicobacter pylori 26695

63.636

90.883

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

93.447

0.567
  recA Streptococcus pneumoniae Rx1

60.671

93.447

0.567
  recA Streptococcus pneumoniae D39

60.671

93.447

0.567
  recA Streptococcus pneumoniae R6

60.671

93.447

0.567
  recA Streptococcus mutans UA159

61.231

92.593

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.453

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.25

91.168

0.558
  recA Lactococcus lactis subsp. cremoris KW2

56.928

94.587

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.585

92.023

0.53