Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R0135_RS05355 Genome accession   NZ_CP136864
Coordinates   1204952..1206013 (-) Length   353 a.a.
NCBI ID   WP_407349224.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1199952..1211013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS05345 (R0135_05320) - 1202117..1204234 (-) 2118 WP_407349222.1 M28 family peptidase -
  R0135_RS05350 (R0135_05325) - 1204321..1204740 (-) 420 WP_407349223.1 regulatory protein RecX -
  R0135_RS05355 (R0135_05330) recA 1204952..1206013 (-) 1062 WP_407349224.1 recombinase RecA Machinery gene
  R0135_RS05360 (R0135_05335) - 1206227..1207285 (-) 1059 WP_407349225.1 M14 family metallopeptidase -
  R0135_RS05365 (R0135_05340) - 1207311..1208789 (-) 1479 WP_407349226.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37536.88 Da        Isoelectric Point: 4.7979

>NTDB_id=893149 R0135_RS05355 WP_407349224.1 1204952..1206013(-) (recA) [Congregibacter variabilis strain IMCC43200]
MNANKEKALEAALSQIDRQFGKGTVMRMGDNDRIAIPAISTGSLGLDVALGIGGLPKGRICEIFGPESSGKTTLTLQVIA
EAQKAGGTAAFIDAEHALDPIYAEKLGVKIDDLIVSQPDTGEQALEVTEMLVRSGAVDVLVVDSVAALTPRAEIEGDMGD
SHVGLQARLLSQAMRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLGLVDKSGAWYAYKGDKIGQGKANAAKFLEDNPALGSEIEG
LIRSQLLDDGSAAKDDVDAAIEAKAASEDEAAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=893149 R0135_RS05355 WP_407349224.1 1204952..1206013(-) (recA) [Congregibacter variabilis strain IMCC43200]
ATGAACGCAAACAAAGAAAAGGCCCTCGAAGCCGCCCTAAGCCAGATCGATCGTCAGTTCGGCAAGGGCACGGTCATGCG
CATGGGCGACAACGACCGTATAGCGATCCCCGCAATTTCTACCGGTTCTTTGGGGCTGGATGTCGCACTGGGTATTGGCG
GTCTTCCCAAAGGCCGGATCTGTGAGATCTTTGGTCCTGAGTCTTCAGGTAAAACTACGCTGACTCTGCAGGTAATCGCC
GAAGCCCAGAAAGCGGGCGGCACTGCGGCGTTTATTGATGCGGAGCACGCACTGGACCCCATTTACGCAGAAAAGCTGGG
TGTAAAAATCGATGATCTGATTGTGTCCCAGCCAGACACCGGTGAGCAGGCACTGGAAGTTACCGAGATGCTTGTGCGGT
CCGGCGCTGTTGATGTGTTGGTAGTGGACTCCGTTGCGGCACTGACGCCGCGAGCAGAGATCGAAGGCGACATGGGTGAC
TCCCACGTGGGCTTGCAAGCTCGACTGCTCAGCCAGGCTATGCGCAAACTCACCGCGACAATCAAACAGACTAACTGCCT
GGTGATCTTCATTAACCAGATCCGCATGAAGATCGGGGTCATGTTTGGTTCACCTGAAACCACCACCGGCGGTAACGCAC
TGAAGTTTTATTCTTCAGTACGACTCGATATTCGCCGTATCGGTGCGGTCAAGGAGGGCGATGAGGTGGTTGGTAACGAA
ACCCGCGTCAAGGTGGTGAAGAACAAAGTCGCGCCGCCGTTCAAGCAGGCCGAGTTCCAGATTATGTACGGACGAGGTAT
TTACCGAACGGCAGAGGTCATCGATTGGGGTGTCAAATTGGGTCTGGTTGATAAATCAGGCGCATGGTATGCCTACAAGG
GCGACAAGATCGGTCAGGGTAAGGCGAATGCTGCGAAGTTTCTTGAGGACAATCCAGCGCTGGGCAGCGAGATCGAAGGT
TTGATCCGCTCACAGCTTCTTGACGATGGCTCAGCTGCCAAAGATGACGTTGACGCTGCTATTGAGGCCAAAGCGGCCTC
TGAAGACGAGGCGGCCGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.817

92.635

0.739
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.942

98.017

0.686
  recA Vibrio cholerae strain A1552

69.942

98.017

0.686
  recA Acinetobacter baylyi ADP1

70.674

96.601

0.683
  recA Acinetobacter baumannii D1279779

71.601

93.768

0.671
  recA Ralstonia pseudosolanacearum GMI1000

70.859

92.351

0.654
  recA Neisseria gonorrhoeae MS11

68.923

92.068

0.635
  recA Neisseria gonorrhoeae MS11

68.923

92.068

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.923

92.068

0.635
  recA Glaesserella parasuis strain SC1401

69.255

91.218

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.307

96.034

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.768

0.595
  recA Streptococcus mitis NCTC 12261

58.074

100

0.581
  recA Helicobacter pylori strain NCTC11637

64.263

90.368

0.581
  recA Streptococcus mitis SK321

57.746

100

0.581
  recA Streptococcus mutans UA159

57.79

100

0.578
  recA Helicobacter pylori 26695

63.636

90.368

0.575
  recA Streptococcus pneumoniae Rx1

58.772

96.884

0.569
  recA Streptococcus pneumoniae TIGR4

58.772

96.884

0.569
  recA Streptococcus pneumoniae R6

58.772

96.884

0.569
  recA Streptococcus pneumoniae D39

58.772

96.884

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

61.61

91.501

0.564
  recA Streptococcus pyogenes NZ131

59.816

92.351

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

60.312

90.652

0.547
  recA Lactococcus lactis subsp. cremoris KW2

56.083

95.467

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.73

89.235

0.524