Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R1917_RS06000 Genome accession   NZ_CP136828
Coordinates   1223027..1224091 (+) Length   354 a.a.
NCBI ID   WP_110493905.1    Uniprot ID   -
Organism   Citrobacter koseri strain K2521     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1218027..1229091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1917_RS05975 (R1917_05975) mltB 1218494..1219594 (+) 1101 WP_047461712.1 lytic murein transglycosylase B -
  R1917_RS05980 (R1917_05980) - 1219900..1220553 (+) 654 WP_153258541.1 metal ABC transporter ATP-binding protein -
  R1917_RS05985 (R1917_05985) - 1220550..1221410 (+) 861 WP_012134809.1 metal ABC transporter permease -
  R1917_RS05990 (R1917_05990) - 1221425..1222303 (+) 879 WP_024130887.1 metal ABC transporter substrate-binding protein -
  R1917_RS05995 (R1917_05995) pncC 1222433..1222930 (+) 498 WP_024130886.1 nicotinamide-nucleotide amidase -
  R1917_RS06000 (R1917_06000) recA 1223027..1224091 (+) 1065 WP_110493905.1 recombinase RecA Machinery gene
  R1917_RS06005 (R1917_06005) recX 1224198..1224698 (+) 501 WP_047461718.1 recombination regulator RecX -
  R1917_RS06010 (R1917_06010) alaS 1224830..1227457 (+) 2628 WP_047461723.1 alanine--tRNA ligase -
  R1917_RS06015 (R1917_06015) csrA 1227697..1227882 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38118.49 Da        Isoelectric Point: 4.8171

>NTDB_id=893041 R1917_RS06000 WP_110493905.1 1223027..1224091(+) (recA) [Citrobacter koseri strain K2521]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEI
EKKVRELLLSNQDSTPDFSVDDNGEGVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=893041 R1917_RS06000 WP_110493905.1 1223027..1224091(+) (recA) [Citrobacter koseri strain K2521]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAACAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CGGGTGGCCTGCCTATGGGGCGTATCGTAGAAATCTACGGGCCGGAATCCTCCGGTAAAACCACCCTGACGCTTCAGGTG
ATTGCCGCTGCACAGCGTGAAGGCAAAACCTGTGCGTTTATCGACGCCGAACATGCGCTGGACCCTATCTATGCCCGCAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCAGGCGCTGTAGACGTTATCGTTGTTGACTCCGTGGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCATATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAACAGTCCAA
CACCCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTCATGTTCGGCAACCCGGAAACCACTACCGGGGGTA
ACGCGCTGAAATTCTACGCGTCCGTTCGTCTGGATATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTCGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCCGCGCCGTTTAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCCGGTGCATGGTACAGCT
ATAACGGCGAGAAAATCGGTCAGGGTAAAGCGAATGCCACTACCTGGCTGAAAGAGAACCCGGCGACCGCCAAAGAGATC
GAGAAAAAAGTGCGTGAGCTGCTGCTGAGCAACCAGGACTCGACGCCAGACTTCTCCGTTGATGACAACGGTGAAGGTGT
GAAAGAAACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.503

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.503

0.788
  recA Pseudomonas stutzeri DSM 10701

73.887

95.198

0.703
  recA Acinetobacter baumannii D1279779

74.39

92.655

0.689
  recA Acinetobacter baylyi ADP1

74.085

92.655

0.686
  recA Glaesserella parasuis strain SC1401

69.501

96.328

0.669
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Helicobacter pylori strain NCTC11637

62.018

95.198

0.59
  recA Helicobacter pylori 26695

61.721

95.198

0.588
  recA Streptococcus pneumoniae TIGR4

63.158

91.243

0.576
  recA Streptococcus pneumoniae Rx1

63.158

91.243

0.576
  recA Streptococcus pneumoniae D39

63.158

91.243

0.576
  recA Streptococcus pneumoniae R6

63.158

91.243

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

60.177

95.763

0.576
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

91.525

0.568
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.068

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.808

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551