Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R1Z03_RS12700 Genome accession   NZ_CP136797
Coordinates   2746491..2747582 (-) Length   363 a.a.
NCBI ID   WP_284400760.1    Uniprot ID   -
Organism   Acidovorax sp. BLS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2741491..2752582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Z03_RS12685 (R1Z03_12685) secF 2742580..2743533 (+) 954 WP_272566599.1 protein translocase subunit SecF -
  R1Z03_RS12690 (R1Z03_12690) - 2743570..2745897 (+) 2328 WP_317351313.1 DUF1631 family protein -
  R1Z03_RS12695 (R1Z03_12695) recX 2745949..2746413 (-) 465 WP_317351316.1 recombination regulator RecX -
  R1Z03_RS12700 (R1Z03_12700) recA 2746491..2747582 (-) 1092 WP_284400760.1 recombinase RecA Machinery gene
  R1Z03_RS12705 (R1Z03_12705) - 2747723..2748226 (+) 504 WP_284430677.1 MarR family winged helix-turn-helix transcriptional regulator -
  R1Z03_RS12710 (R1Z03_12710) - 2748354..2750000 (+) 1647 WP_317351321.1 methyl-accepting chemotaxis protein -
  R1Z03_RS12715 (R1Z03_12715) - 2750135..2750809 (+) 675 WP_272566607.1 response regulator transcription factor -
  R1Z03_RS12720 (R1Z03_12720) - 2750895..2752352 (+) 1458 WP_284430679.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38804.59 Da        Isoelectric Point: 5.2021

>NTDB_id=892666 R1Z03_RS12700 WP_284400760.1 2746491..2747582(-) (recA) [Acidovorax sp. BLS4]
MDFAVKGTHPAQPVNTEKAKALQAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP
ESSGKTTLTLQVIAEMQKQGGQCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVA
ALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR
TGTIKKGDEAVGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIIEKSGAWYAYNGEKIGQGRDNSRE
FLRENADLAREIENKVRESLGIALLPASLEAPAAAPAKEAAEK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=892666 R1Z03_RS12700 WP_284400760.1 2746491..2747582(-) (recA) [Acidovorax sp. BLS4]
ATGGACTTCGCCGTCAAGGGGACCCACCCCGCCCAGCCCGTCAACACCGAAAAGGCCAAGGCCCTACAGGCCGCGCTGGC
CCAGATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAGGTGATCGAGGACATCCAGGTCGTCT
CCACCGGCTCGCTGGGCCTGGATATCGCGCTGGGCGTGGGCGGCCTGCCCCGCGGCCGAGTGGTCGAGATCTACGGCCCG
GAATCGTCCGGCAAGACGACGCTCACGCTGCAGGTGATCGCCGAGATGCAAAAGCAGGGCGGCCAGTGCGCCTTCGTCGA
TGCCGAGCACGCGCTCGACGTGCAATACGCCCAGAAGCTCGGCGTGCAGCTGTCCGATCTGCTGATCAGCCAGCCCGACA
CCGGCGAGCAGGCCCTGGAGATCGTGGACAGCCTCGTGCGTTCGGGCGCCGTGGACCTGATCGTGATCGACTCGGTCGCC
GCGCTCACCCCCAAGGCCGAAATCGAAGGCGAAATGGGCGATGCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGC
GCTGCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCG
TGATGTTCGGCAGCCCCGAAACCACCACGGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGTTTGGACATCCGCCGC
ACCGGCACGATCAAGAAGGGCGACGAGGCCGTGGGCAACGAGACCAAGGTCAAGGTCGTGAAGAACAAGGTCAGCCCGCC
GTTCAAAACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACG
CGAAGATCATCGAAAAGAGCGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACTCGCGGGAG
TTCCTGCGCGAGAACGCCGACCTCGCCCGCGAGATCGAGAACAAGGTGCGCGAGAGCCTGGGCATCGCCCTGCTGCCCGC
CAGCCTGGAAGCCCCCGCCGCCGCCCCGGCCAAGGAAGCGGCCGAGAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.639

87.879

0.744
  recA Pseudomonas stutzeri DSM 10701

71.865

90.083

0.647
  recA Neisseria gonorrhoeae MS11

70.695

91.185

0.645
  recA Neisseria gonorrhoeae MS11

70.695

91.185

0.645
  recA Neisseria gonorrhoeae strain FA1090

70.695

91.185

0.645
  recA Acinetobacter baumannii D1279779

70.642

90.083

0.636
  recA Glaesserella parasuis strain SC1401

68.452

92.562

0.634
  recA Acinetobacter baylyi ADP1

70.336

90.083

0.634
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.113

90.083

0.623
  recA Vibrio cholerae strain A1552

69.113

90.083

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.97

90.909

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

91.185

0.606
  recA Helicobacter pylori strain NCTC11637

64.438

90.634

0.584
  recA Helicobacter pylori 26695

64.438

90.634

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

90.083

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

90.909

0.573
  recA Streptococcus mutans UA159

57.835

96.694

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.212

90.909

0.556
  recA Streptococcus pyogenes NZ131

60.486

90.634

0.548
  recA Streptococcus pneumoniae D39

60

90.909

0.545
  recA Streptococcus pneumoniae TIGR4

60

90.909

0.545
  recA Streptococcus pneumoniae Rx1

60

90.909

0.545
  recA Streptococcus pneumoniae R6

60

90.909

0.545
  recA Streptococcus mitis NCTC 12261

58.631

92.562

0.543
  recA Streptococcus mitis SK321

58.631

92.562

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

88.43

0.532