Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RUI03_RS05935 Genome accession   NZ_CP136758
Coordinates   1273415..1274482 (+) Length   355 a.a.
NCBI ID   WP_317289363.1    Uniprot ID   A0AAU0HI53
Organism   Parvularcula sp. LCG005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268415..1279482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI03_RS05920 (RUI03_05920) - 1268773..1269723 (-) 951 WP_317289360.1 esterase-like activity of phytase family protein -
  RUI03_RS05925 (RUI03_05925) cobT 1269726..1271585 (-) 1860 WP_317289361.1 cobaltochelatase subunit CobT -
  RUI03_RS05930 (RUI03_05930) glpK 1271773..1273248 (+) 1476 WP_317289362.1 glycerol kinase GlpK -
  RUI03_RS05935 (RUI03_05935) recA 1273415..1274482 (+) 1068 WP_317289363.1 recombinase RecA Machinery gene
  RUI03_RS05940 (RUI03_05940) - 1274903..1275505 (+) 603 WP_317289364.1 NADH-quinone oxidoreductase subunit J -
  RUI03_RS05945 (RUI03_05945) nuoK 1275508..1275813 (+) 306 WP_317289365.1 NADH-quinone oxidoreductase subunit NuoK -
  RUI03_RS05950 (RUI03_05950) nuoL 1275818..1277977 (+) 2160 WP_317289366.1 NADH-quinone oxidoreductase subunit L -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37595.03 Da        Isoelectric Point: 5.0152

>NTDB_id=892643 RUI03_RS05935 WP_317289363.1 1273415..1274482(+) (recA) [Parvularcula sp. LCG005]
MASNFKVIDGGMDKSKALEAALAHIDKAFGKGSVMKLGAGAVQQIESISTGSLGLDMALGIGGLPKGRVVEIYGPESSGK
TTLTLHVVAETQKIGGTAAFIDAEHALDPVYASKLGVNLDDLLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALTPR
AELEGEMGDSLPGLQARLMSQALRKLTGSISKSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIK
NRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGQGISKVGELLDLGVIANIVEKSGSWYSYNSERIGQGRDNAKTFLKEH
PEIADAIEAAVRKNAGLISDDLLVGPSEDDDAIEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=892643 RUI03_RS05935 WP_317289363.1 1273415..1274482(+) (recA) [Parvularcula sp. LCG005]
ATGGCTTCAAACTTTAAGGTCATCGACGGCGGTATGGATAAGTCAAAAGCGCTCGAGGCAGCGCTCGCTCACATCGATAA
GGCGTTCGGCAAGGGCTCAGTCATGAAGCTCGGTGCCGGTGCGGTTCAGCAGATCGAATCAATCAGCACGGGCTCATTGG
GCCTTGATATGGCGCTGGGGATAGGCGGGCTGCCGAAAGGCCGTGTCGTTGAGATTTACGGTCCTGAATCGTCCGGGAAG
ACAACACTGACCCTGCACGTGGTCGCCGAAACCCAGAAAATTGGCGGTACGGCGGCGTTTATCGATGCTGAGCATGCGCT
TGACCCTGTCTATGCGAGCAAGCTGGGTGTCAATCTTGATGACTTGCTGATCTCCCAGCCCGATACCGGCGAGCAGGCGT
TGGAAATCGCCGATACGCTGGTGCGGTCCGGGGCTGTCGACGTGCTTGTCATCGACTCTGTGGCGGCCCTTACACCGCGC
GCCGAACTGGAAGGGGAGATGGGCGACAGCCTGCCTGGCCTGCAGGCGCGGTTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGGCTCGATCTCGAAGTCCAATTGTCTGGTCATCTTTATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCTCGC
CTGAAACGACGACGGGCGGCAATGCGCTGAAATTCTACTCTTCTGTCCGGCTTGACATTCGACGCATTGGGGCGATCAAG
AACCGTGATGAGGTCGTGGGCAACCAGACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCACCGCCCTTCAAGCAGGTCGA
ATTCGACATCATGTACGGGCAGGGCATTTCCAAGGTCGGGGAATTGCTGGACCTCGGGGTCATTGCCAACATCGTCGAAA
AATCAGGCAGCTGGTACAGCTATAATTCAGAGCGGATCGGCCAGGGCCGGGACAATGCAAAGACCTTTCTCAAGGAGCAT
CCCGAGATTGCGGACGCGATTGAAGCGGCAGTGCGGAAAAATGCTGGTCTGATATCTGATGACTTATTGGTCGGTCCGAG
CGAAGATGATGACGCGATTGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

76.038

88.169

0.67
  recA Pseudomonas stutzeri DSM 10701

69.231

95.211

0.659
  recA Neisseria gonorrhoeae MS11

71.651

90.423

0.648
  recA Neisseria gonorrhoeae strain FA1090

71.651

90.423

0.648
  recA Neisseria gonorrhoeae MS11

71.651

90.423

0.648
  recA Glaesserella parasuis strain SC1401

71.473

89.859

0.642
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.598

92.394

0.634
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

90.423

0.634
  recA Vibrio cholerae strain A1552

70.093

90.423

0.634
  recA Acinetobacter baylyi ADP1

69.565

90.704

0.631
  recA Acinetobacter baumannii D1279779

69.159

90.423

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.723

96.62

0.625
  recA Latilactobacillus sakei subsp. sakei 23K

64.058

97.183

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

66.462

91.549

0.608
  recA Streptococcus mitis NCTC 12261

60.116

97.465

0.586
  recA Helicobacter pylori 26695

64

91.549

0.586
  recA Helicobacter pylori strain NCTC11637

64

91.549

0.586
  recA Streptococcus pneumoniae R6

62.349

93.521

0.583
  recA Streptococcus pneumoniae Rx1

62.349

93.521

0.583
  recA Streptococcus pneumoniae D39

62.349

93.521

0.583
  recA Streptococcus pneumoniae TIGR4

62.349

93.521

0.583
  recA Streptococcus mutans UA159

61.493

94.366

0.58
  recA Lactococcus lactis subsp. cremoris KW2

61.194

94.366

0.577
  recA Streptococcus mitis SK321

61.446

93.521

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

91.549

0.572
  recA Streptococcus pyogenes NZ131

61.043

91.831

0.561