Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R1T39_RS03650 Genome accession   NZ_CP136697
Coordinates   726219..727283 (-) Length   354 a.a.
NCBI ID   WP_317406217.1    Uniprot ID   -
Organism   Sulfitobacter dubius strain CI.11.F.A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721219..732283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T39_RS03635 (R1T39_03635) - 722320..723045 (-) 726 WP_243263036.1 phosphatase PAP2 family protein -
  R1T39_RS03640 (R1T39_03640) - 723129..723416 (-) 288 WP_243263035.1 DUF1330 domain-containing protein -
  R1T39_RS03645 (R1T39_03645) alaS 723422..726079 (-) 2658 WP_243263034.1 alanine--tRNA ligase -
  R1T39_RS03650 (R1T39_03650) recA 726219..727283 (-) 1065 WP_317406217.1 recombinase RecA Machinery gene
  R1T39_RS03655 (R1T39_03655) - 727494..728087 (+) 594 WP_317406345.1 gamma-glutamyl kinase -
  R1T39_RS03660 (R1T39_03660) - 728121..729869 (-) 1749 WP_394805087.1 ATP-binding protein -
  R1T39_RS03665 (R1T39_03665) - 730059..730238 (+) 180 WP_317406219.1 hypothetical protein -
  R1T39_RS03670 (R1T39_03670) - 730531..731691 (-) 1161 WP_243263033.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37697.10 Da        Isoelectric Point: 4.9474

>NTDB_id=892535 R1T39_RS03650 WP_317406217.1 726219..727283(-) (recA) [Sulfitobacter dubius strain CI.11.F.A3]
MADLLTMDSKKTAEKQKALDSALAQIERQFGKGSIMKLGAEGAIQDIKASSTGSLGLDIALGIGGLPMGRIIEIYGPESS
GKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYAKKLGVDIDELLISQPDTGEQALEITDTLVRSGAVNMVIVNSVAALT
PKSELEGEMGDSSVGVQARLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGA
LKDRDEVVGNATKVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFSYGDERIGQGRENAKNFLK
ENTAMASEIEDKIRAAHGLDFDGSGGDDADILEA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=892535 R1T39_RS03650 WP_317406217.1 726219..727283(-) (recA) [Sulfitobacter dubius strain CI.11.F.A3]
ATGGCAGATCTTTTGACAATGGACAGCAAGAAAACCGCGGAAAAGCAAAAGGCGCTCGACAGCGCGCTGGCCCAGATCGA
ACGTCAGTTCGGCAAAGGCTCGATCATGAAATTGGGCGCCGAAGGGGCGATCCAAGACATCAAGGCCAGCTCAACAGGCT
CGCTTGGCCTCGATATCGCGCTTGGCATTGGCGGTTTGCCGATGGGGCGTATCATCGAGATTTACGGCCCGGAATCTTCG
GGTAAAACCACGCTGACCCTGCACTGCGTGGCGGAACAGCAGAAAGCTGGCGGCGTTTGCGCCTTCGTCGATGCGGAGCA
CGCGCTTGACCCACAATATGCGAAAAAGCTTGGCGTGGATATTGATGAACTGCTGATTTCGCAGCCTGACACAGGCGAAC
AGGCGTTGGAGATTACTGATACGCTTGTGCGCTCTGGTGCGGTGAATATGGTTATCGTCAACTCGGTGGCGGCTTTGACA
CCAAAATCCGAACTCGAAGGCGAAATGGGTGACAGCAGCGTCGGCGTGCAGGCACGACTGATGAGCCAAGCCATGCGGAA
GCTCACCGGTTCGATCAGCCGCTCCAATTGTATGGTGATCTTCATCAACCAGATCAGGATGAAGATCGGCGTCATGTTCG
GCTCGCCCGAGACGACGACCGGCGGTAATGCGTTGAAATTCTATTCGTCTGTCCGGCTCGACATTCGCCGCATCGGCGCA
TTGAAGGACCGCGATGAAGTTGTCGGCAATGCGACGAAGGTTAAGGTCGTCAAGAACAAGGTTGCGCCGCCCTTCAAGCA
GGTCGAGTTCGACATCATGTATGGCGAAGGTATTTCGAAAATGGGCGAATTGCTTGATCTGGGGGTCAAGGCCGGCGTGG
TCGATAAGTCAGGATCATGGTTCAGCTACGGTGATGAGCGGATCGGGCAGGGGCGTGAGAACGCTAAGAACTTCCTGAAA
GAAAATACCGCCATGGCCTCCGAGATCGAAGACAAGATCCGCGCGGCACATGGGTTGGATTTTGATGGATCCGGTGGTGA
CGACGCGGATATCCTTGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.341

92.655

0.661
  recA Glaesserella parasuis strain SC1401

70.717

90.678

0.641
  recA Pseudomonas stutzeri DSM 10701

69.782

90.678

0.633
  recA Neisseria gonorrhoeae MS11

67.988

92.655

0.63
  recA Neisseria gonorrhoeae MS11

67.988

92.655

0.63
  recA Neisseria gonorrhoeae strain FA1090

67.988

92.655

0.63
  recA Vibrio cholerae strain A1552

69.375

90.395

0.627
  recA Acinetobacter baumannii D1279779

69.375

90.395

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.375

90.395

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

67.069

93.503

0.627
  recA Acinetobacter baylyi ADP1

68.75

90.395

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.075

94.633

0.616
  recA Helicobacter pylori strain NCTC11637

66.258

92.09

0.61
  recA Helicobacter pylori 26695

65.644

92.09

0.605
  recA Lactococcus lactis subsp. cremoris KW2

63.095

94.915

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.09

0.588
  recA Streptococcus pneumoniae Rx1

61.631

93.503

0.576
  recA Streptococcus pneumoniae D39

61.631

93.503

0.576
  recA Streptococcus pneumoniae R6

61.631

93.503

0.576
  recA Streptococcus pneumoniae TIGR4

61.631

93.503

0.576
  recA Streptococcus mitis SK321

61.329

93.503

0.573
  recA Streptococcus mitis NCTC 12261

61.329

93.503

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

92.09

0.568
  recA Streptococcus mutans UA159

59.697

93.22

0.556
  recA Streptococcus pyogenes NZ131

59.878

92.938

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

91.525

0.556