Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RSQ48_RS09950 Genome accession   NZ_CP136682
Coordinates   2211667..2212749 (-) Length   360 a.a.
NCBI ID   WP_003799517.1    Uniprot ID   -
Organism   Alcaligenes sp. SJTW-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2206667..2217749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSQ48_RS09925 (RSQ48_09920) sucD 2206704..2207585 (-) 882 WP_003799528.1 succinate--CoA ligase subunit alpha -
  RSQ48_RS09930 (RSQ48_09925) sucC 2207607..2208767 (-) 1161 WP_003799526.1 ADP-forming succinate--CoA ligase subunit beta -
  RSQ48_RS09935 (RSQ48_09930) - 2208852..2209430 (-) 579 WP_039942913.1 DUF2889 domain-containing protein -
  RSQ48_RS09940 (RSQ48_09935) - 2209931..2210851 (+) 921 WP_336579428.1 LysR family transcriptional regulator -
  RSQ48_RS09945 (RSQ48_09940) recX 2211032..2211670 (-) 639 WP_235587613.1 recombination regulator RecX -
  RSQ48_RS09950 (RSQ48_09945) recA 2211667..2212749 (-) 1083 WP_003799517.1 recombinase RecA Machinery gene
  RSQ48_RS09955 (RSQ48_09950) - 2212956..2213645 (+) 690 WP_003799515.1 response regulator transcription factor -
  RSQ48_RS09960 (RSQ48_09955) - 2213748..2215118 (+) 1371 WP_003799514.1 sensor histidine kinase -
  RSQ48_RS09965 (RSQ48_09960) - 2215123..2216796 (+) 1674 WP_059317549.1 MFS transporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38827.39 Da        Isoelectric Point: 5.6053

>NTDB_id=892459 RSQ48_RS09950 WP_003799517.1 2211667..2212749(-) (recA) [Alcaligenes sp. SJTW-7]
MDDKNSKAVASERSKALAAALSQIEKQFGKGSIMRYGDDTVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKLKGTCAFIDAEHALDVQYAQKLGVNLADLLISQPDTGEQALEITEALVRSGSVDLIVIDSVAALTPK
AEIEGDMGDSLPGLQARLMSQALRKLTATIKRANCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK
RGDEMVGNETRVKVVKNKVAPPFKQTEFDIMYGSGISREGEIIDLGVQTGVVDKAGAWYSYDGNRIGQGKDNVREFLKER
PELAREIENKVREKLGVALMSTTVSRAEAAPVADAPEGDR

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=892459 RSQ48_RS09950 WP_003799517.1 2211667..2212749(-) (recA) [Alcaligenes sp. SJTW-7]
ATGGACGATAAAAACAGCAAAGCAGTGGCCTCGGAACGTTCCAAGGCGTTGGCCGCCGCTCTGTCGCAAATCGAAAAGCA
GTTCGGCAAGGGTTCGATCATGCGCTATGGCGACGACACCGTCGAGCACGACATCCAGGTGGTTTCCACGGGCTCGCTGG
GTTTGGACATTGCTTTGGGCGTTGGTGGTCTGCCTCGTGGTCGCGTTATCGAGATTTATGGGCCGGAGTCCTCGGGTAAG
ACCACCTTGACCTTGCAAGTGATTGCCGAAATGCAAAAGCTCAAGGGAACGTGCGCGTTTATTGACGCTGAGCACGCGCT
GGATGTGCAGTATGCTCAAAAGCTGGGCGTTAATCTGGCTGATCTGCTGATCTCTCAGCCCGACACGGGTGAGCAGGCCC
TGGAAATTACCGAAGCCCTGGTACGTTCGGGCTCGGTGGACCTGATTGTCATCGACTCGGTCGCGGCTCTGACCCCCAAG
GCTGAAATCGAAGGCGATATGGGCGATTCCCTCCCTGGTCTGCAAGCCCGCCTGATGAGTCAGGCCCTGCGCAAGTTGAC
CGCCACCATCAAGCGTGCCAATTGTACGGTTATCTTCATTAATCAGATCCGCATGAAGATCGGTGTCATGTTCGGCAACC
CCGAAACCACCACGGGCGGTAACGCATTGAAGTTTTACTCGTCCGTGCGTCTGGATATTCGTCGCATCGGCTCGATCAAG
CGCGGTGACGAAATGGTGGGTAACGAAACCCGCGTTAAAGTGGTCAAGAACAAGGTCGCGCCTCCGTTCAAACAGACCGA
GTTCGACATCATGTACGGCAGCGGTATTTCGCGTGAAGGCGAGATTATCGATCTGGGCGTACAAACCGGTGTGGTCGACA
AGGCGGGCGCCTGGTACAGCTACGACGGCAACCGGATTGGCCAGGGCAAGGACAATGTGCGGGAATTCCTGAAAGAGCGT
CCGGAGCTGGCGCGTGAAATCGAAAACAAGGTTCGCGAGAAACTGGGCGTAGCCTTGATGAGCACCACGGTCAGCCGTGC
CGAAGCTGCGCCTGTTGCTGACGCGCCCGAGGGTGATCGTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.711

94.167

0.769
  recA Pseudomonas stutzeri DSM 10701

70.435

95.833

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.335

96.944

0.653
  recA Vibrio cholerae strain A1552

67.335

96.944

0.653
  recA Acinetobacter baumannii D1279779

72.446

89.722

0.65
  recA Neisseria gonorrhoeae MS11

68.529

94.444

0.647
  recA Neisseria gonorrhoeae MS11

68.529

94.444

0.647
  recA Neisseria gonorrhoeae strain FA1090

68.529

94.444

0.647
  recA Acinetobacter baylyi ADP1

71.827

89.722

0.644
  recA Glaesserella parasuis strain SC1401

71.296

90

0.642
  recA Helicobacter pylori 26695

62

97.222

0.603
  recA Helicobacter pylori strain NCTC11637

61.714

97.222

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

91.389

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

91.389

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

90.833

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

89.722

0.567
  recA Streptococcus pneumoniae R6

60.417

93.333

0.564
  recA Streptococcus pneumoniae TIGR4

60.417

93.333

0.564
  recA Streptococcus pneumoniae Rx1

60.417

93.333

0.564
  recA Streptococcus pneumoniae D39

60.417

93.333

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

61.774

90.833

0.561
  recA Streptococcus mitis SK321

59.292

94.167

0.558
  recA Streptococcus mitis NCTC 12261

59.292

94.167

0.558
  recA Streptococcus pyogenes NZ131

59.403

93.056

0.553
  recA Streptococcus mutans UA159

58.929

93.333

0.55
  recA Lactococcus lactis subsp. cremoris KW2

56.932

94.167

0.536