Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RSE14_RS04225 Genome accession   NZ_CP136573
Coordinates   849230..850294 (-) Length   354 a.a.
NCBI ID   WP_324075992.1    Uniprot ID   -
Organism   MAG: Erythrobacter sp. isolate GU0601_MAG4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 844230..855294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSE14_RS04215 (RSE14_04215) - 845577..846323 (-) 747 WP_324075990.1 energy transducer TonB -
  RSE14_RS04220 (RSE14_04220) alaS 846320..848977 (-) 2658 WP_324075991.1 alanine--tRNA ligase -
  RSE14_RS04225 (RSE14_04225) recA 849230..850294 (-) 1065 WP_324075992.1 recombinase RecA Machinery gene
  RSE14_RS04230 (RSE14_04230) - 850435..852891 (-) 2457 WP_324075993.1 response regulator -
  RSE14_RS04235 (RSE14_04235) - 853026..853637 (-) 612 WP_324075994.1 DUF2062 domain-containing protein -
  RSE14_RS04240 (RSE14_04240) smpB 853792..854274 (-) 483 WP_324075995.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38096.62 Da        Isoelectric Point: 5.3567

>NTDB_id=891614 RSE14_RS04225 WP_324075992.1 849230..850294(-) (recA) [MAG: Erythrobacter sp. isolate GU0601_MAG4]
MATSLKLVEKEKDVDRQKALEAALAQIDRAFGKGSAMKLGQKETMQVEAISTGSLGLDIALGVGGLPKGRVIEVYGPESS
GKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEIIGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGSWFSYDSIRIGQGRENAKTYLK
ENPEVCDRLEAAIRSRTDAVAGEMMTGPDADSED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=891614 RSE14_RS04225 WP_324075992.1 849230..850294(-) (recA) [MAG: Erythrobacter sp. isolate GU0601_MAG4]
ATGGCTACGTCATTGAAACTTGTAGAGAAGGAAAAGGACGTGGATCGTCAAAAGGCGCTCGAAGCCGCGCTTGCGCAGAT
TGACCGGGCCTTCGGCAAGGGTTCGGCGATGAAGCTGGGCCAGAAGGAAACCATGCAGGTCGAAGCGATCTCGACCGGCT
CTCTGGGTCTCGACATCGCGCTTGGCGTGGGCGGCCTGCCCAAGGGCCGCGTGATCGAGGTCTATGGTCCGGAAAGCTCG
GGCAAGACCACGCTGGCGCTGCATGTCATTGCCGAAGCGCAGAAGGCTGGCGGTACCGCGGCTTTCGTTGACGCGGAGCA
CGCACTCGATCCGGTCTACGCCAAGAAGCTTGGTGTCAATATTGACGAGCTGATCGTCTCGCAGCCCGATACGGGCGAGC
AGGCGCTGGAAATCACCGATACGCTGGTGCGCTCGAACGCGATCGACGTTCTGGTGGTCGATTCGGTTGCGGCGCTGGTG
CCGCGTGCGGAAATCGAAGGCGAGATGGGCGATTCGCACGTTGGCCTGCAGGCCCGCCTGATGAGCCAGTCGCTGCGCAA
GCTGACCGGGTCGATCAACCGCTCCAAGTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGTACG
GCAACCCCGAGACCACTACCGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTCCGTCTCGATATCCGCCGCACCGGCCAG
ATCAAGGATCGTGACGAGATCATCGGCAACACCACCCGCGTGAAGGTGGTCAAGAACAAGGTCGCTCCGCCGTTCAAGCA
GGTCGAATTCGACATCATGTATGGCGAGGGCATCTCGAAGATCGGTGAAATCCTCGATCTCGGCGTGAAGGCGGGCCTCG
TCGAGAAGTCGGGGAGCTGGTTCTCCTACGATTCGATCCGCATCGGGCAGGGGCGTGAGAACGCCAAGACCTACCTCAAG
GAAAACCCGGAAGTTTGCGACCGCCTGGAAGCTGCAATTCGCAGCCGGACCGACGCGGTGGCCGGGGAGATGATGACGGG
GCCGGACGCGGACTCCGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

66.761

99.435

0.664
  recA Vibrio cholerae strain A1552

67.656

95.198

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.656

95.198

0.644
  recA Pseudomonas stutzeri DSM 10701

70.37

91.525

0.644
  recA Neisseria gonorrhoeae MS11

68.944

90.96

0.627
  recA Neisseria gonorrhoeae MS11

68.944

90.96

0.627
  recA Neisseria gonorrhoeae strain FA1090

68.944

90.96

0.627
  recA Acinetobacter baylyi ADP1

64.912

96.61

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.767

93.503

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

67.702

90.96

0.616
  recA Acinetobacter baumannii D1279779

66.667

91.525

0.61
  recA Helicobacter pylori strain NCTC11637

62.391

96.893

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.049

91.525

0.605
  recA Ralstonia pseudosolanacearum GMI1000

69.156

87.006

0.602
  recA Helicobacter pylori 26695

62.099

96.893

0.602
  recA Streptococcus pneumoniae Rx1

59.943

99.435

0.596
  recA Streptococcus pneumoniae D39

59.943

99.435

0.596
  recA Streptococcus pneumoniae R6

59.943

99.435

0.596
  recA Streptococcus pneumoniae TIGR4

59.943

99.435

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

64.798

90.678

0.588
  recA Streptococcus mitis NCTC 12261

60.641

96.893

0.588
  recA Streptococcus mitis SK321

60.641

96.893

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

92.09

0.573
  recA Streptococcus pyogenes NZ131

61.963

92.09

0.571
  recA Lactococcus lactis subsp. cremoris KW2

59.644

95.198

0.568
  recA Streptococcus mutans UA159

61.111

91.525

0.559