Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHOCP_RS05715 Genome accession   NZ_CP136421
Coordinates   1093459..1094496 (+) Length   345 a.a.
NCBI ID   WP_277996992.1    Uniprot ID   A0A2T0AXE2
Organism   Moorella humiferrea strain OCP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088459..1099496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHOCP_RS05690 (MHOCP_11330) - 1088508..1089350 (+) 843 WP_338825555.1 RodZ domain-containing protein -
  MHOCP_RS05695 (MHOCP_11340) rimO 1089347..1090645 (+) 1299 WP_106004290.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MHOCP_RS05700 (MHOCP_11350) - 1090736..1091281 (+) 546 WP_338825556.1 hypothetical protein -
  MHOCP_RS05705 (MHOCP_11360) - 1091274..1092776 (+) 1503 WP_338825557.1 AAA family ATPase -
  MHOCP_RS05710 (MHOCP_11370) thpR 1092847..1093425 (+) 579 WP_106004293.1 RNA 2',3'-cyclic phosphodiesterase -
  MHOCP_RS05715 (MHOCP_11380) recA 1093459..1094496 (+) 1038 WP_277996992.1 recombinase RecA Machinery gene
  MHOCP_RS05720 (MHOCP_11390) - 1094480..1094977 (+) 498 WP_338825558.1 regulatory protein RecX -
  MHOCP_RS05725 (MHOCP_11400) rny 1095220..1096740 (+) 1521 WP_277996996.1 ribonuclease Y -
  MHOCP_RS05730 (MHOCP_11410) - 1096869..1097396 (+) 528 WP_245907742.1 hypothetical protein -
  MHOCP_RS05735 (MHOCP_11420) - 1097445..1098230 (+) 786 WP_338825559.1 TIGR00282 family metallophosphoesterase -
  MHOCP_RS05740 (MHOCP_11430) - 1098217..1099077 (+) 861 WP_338825560.1 PHP domain-containing protein -
  MHOCP_RS05745 (MHOCP_11440) - 1099126..1099392 (+) 267 WP_338825561.1 translation initiation factor 2 -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36938.35 Da        Isoelectric Point: 6.3730

>NTDB_id=890904 MHOCP_RS05715 WP_277996992.1 1093459..1094496(+) (recA) [Moorella humiferrea strain OCP]
MISPDKQRALETALLQIERHFGKGSIMKLGENGARLNVEAISTGALPLDVALGVGGLPRGRVIEIFGPESSGKTTVALHV
VAEAQRNGGAAAFIDAEHALDPVYAKNLGVDIDNLLVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPRAELDGEM
GDAHVGLQARLMSQALRKLAGVIAKSRTVAIFINQLREKVGVLFGSPETTPGGRALKFYASVRLDVRKLDQVKQGTEIIG
SRTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGTELDIVKKSGAWYSLGEERLGQGREAAKEYLRNHPEVAAAI
ENQIRIKTGLVKVETGDAAEGAEER

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=890904 MHOCP_RS05715 WP_277996992.1 1093459..1094496(+) (recA) [Moorella humiferrea strain OCP]
GTGATTTCTCCAGATAAACAGCGGGCTTTGGAAACGGCCTTACTTCAGATTGAAAGACACTTCGGCAAGGGCTCCATTAT
GAAGCTGGGTGAAAACGGCGCCCGCCTCAATGTAGAAGCAATCTCCACAGGCGCCCTGCCCCTGGATGTGGCCCTGGGGG
TGGGGGGGCTGCCGCGTGGCCGGGTGATAGAGATTTTTGGACCGGAGTCTTCGGGAAAAACGACGGTCGCCCTGCACGTC
GTAGCGGAGGCCCAGCGTAACGGGGGTGCGGCGGCCTTTATCGATGCCGAACACGCCCTTGATCCAGTTTATGCCAAAAA
TTTGGGCGTGGATATTGATAATCTTCTCGTCTCGCAGCCGGATACCGGCGAACAGGCCCTGGAAATAGCCGAAGCGCTGG
TGCGCAGCGGGGCCATCGACGTCATTGTCATCGATTCCGTAGCCGCCTTGGTGCCCCGTGCCGAACTGGACGGTGAAATG
GGCGACGCCCATGTAGGACTTCAGGCAAGACTTATGTCCCAGGCCTTGCGCAAGCTGGCGGGCGTTATCGCCAAATCGCG
TACGGTGGCCATTTTCATCAACCAGCTACGGGAAAAGGTGGGCGTCCTTTTCGGCAGCCCCGAAACCACTCCGGGCGGGC
GAGCCCTGAAATTTTATGCTTCGGTACGCCTCGACGTACGCAAGCTTGACCAGGTAAAACAGGGAACGGAGATAATCGGC
AGCCGCACCAGGGTCAAGGTTGTTAAAAACAAAGTCGCTCCTCCTTTCCGTCAGGCTGAATTCGACATTATTTACGGCCG
GGGAATAGATCGGGAAGGCTGCCTTCTTGACATGGGGACAGAATTAGATATAGTAAAGAAGAGTGGGGCCTGGTATTCAC
TGGGGGAGGAACGCCTGGGACAGGGACGCGAGGCGGCGAAGGAATACCTGCGTAATCATCCAGAAGTGGCAGCGGCCATT
GAAAACCAGATTCGGATAAAAACTGGATTGGTGAAGGTGGAAACAGGGGACGCGGCCGAAGGTGCAGAGGAAAGGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T0AXE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.018

94.493

0.652
  recA Latilactobacillus sakei subsp. sakei 23K

64.392

97.681

0.629
  recA Streptococcus mitis SK321

62.609

100

0.626
  recA Streptococcus pneumoniae TIGR4

64.048

95.942

0.614
  recA Streptococcus pneumoniae R6

64.048

95.942

0.614
  recA Streptococcus pneumoniae Rx1

64.048

95.942

0.614
  recA Streptococcus pneumoniae D39

64.048

95.942

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.329

95.072

0.612
  recA Streptococcus mitis NCTC 12261

63.444

95.942

0.609
  recA Pseudomonas stutzeri DSM 10701

64.087

93.623

0.6
  recA Lactococcus lactis subsp. cremoris KW2

62.236

95.942

0.597
  recA Neisseria gonorrhoeae strain FA1090

62.614

95.362

0.597
  recA Neisseria gonorrhoeae MS11

62.614

95.362

0.597
  recA Neisseria gonorrhoeae MS11

62.614

95.362

0.597
  recA Streptococcus pyogenes NZ131

62.614

95.362

0.597
  recA Streptococcus mutans UA159

59.13

100

0.591
  recA Acinetobacter baylyi ADP1

63.24

93.043

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.346

93.913

0.586
  recA Acinetobacter baumannii D1279779

62.346

93.913

0.586
  recA Vibrio cholerae strain A1552

62.346

93.913

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.721

99.71

0.586
  recA Helicobacter pylori strain NCTC11637

61.094

95.362

0.583
  recA Glaesserella parasuis strain SC1401

62.5

92.754

0.58
  recA Helicobacter pylori 26695

60.79

95.362

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

93.043

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.537

95.072

0.557