Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MCACP_RS06240 Genome accession   NZ_CP136420
Coordinates   1212349..1213389 (+) Length   346 a.a.
NCBI ID   WP_406678485.1    Uniprot ID   -
Organism   Moorella sp. ACPs     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1207349..1218389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCACP_RS06215 (MCACP_12460) - 1207459..1208220 (+) 762 WP_406678481.1 helix-turn-helix domain-containing protein -
  MCACP_RS06220 (MCACP_12470) rimO 1208217..1209521 (+) 1305 WP_406678482.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MCACP_RS06225 (MCACP_12480) - 1209613..1210149 (+) 537 WP_406678483.1 hypothetical protein -
  MCACP_RS06230 (MCACP_12490) - 1210151..1211644 (+) 1494 WP_406678484.1 AAA family ATPase -
  MCACP_RS06235 (MCACP_12500) thpR 1211716..1212294 (+) 579 WP_406678697.1 RNA 2',3'-cyclic phosphodiesterase -
  MCACP_RS06240 (MCACP_12510) recA 1212349..1213389 (+) 1041 WP_406678485.1 recombinase RecA Machinery gene
  MCACP_RS06245 (MCACP_12520) - 1213373..1213879 (+) 507 WP_406678486.1 regulatory protein RecX -
  MCACP_RS06250 (MCACP_12530) rny 1214190..1215662 (+) 1473 WP_406678487.1 ribonuclease Y -
  MCACP_RS06255 (MCACP_12540) - 1215794..1216321 (+) 528 WP_406678488.1 hypothetical protein -
  MCACP_RS06260 (MCACP_12550) - 1216371..1217156 (+) 786 WP_406678489.1 TIGR00282 family metallophosphoesterase -
  MCACP_RS06265 (MCACP_12560) - 1217195..1218040 (+) 846 WP_406678490.1 PHP domain-containing protein -
  MCACP_RS06270 (MCACP_12570) - 1218089..1218355 (+) 267 WP_406678491.1 translation initiation factor 2 -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36871.25 Da        Isoelectric Point: 6.0798

>NTDB_id=890885 MCACP_RS06240 WP_406678485.1 1212349..1213389(+) (recA) [Moorella sp. ACPs]
MVLSDKQRALENALLQIERHFGKGSIMKLGESGARLNVEAISTGALPLDLALGVGGLPRGRVVEIFGPESSGKTTVALHV
IAEAQRGGGTAAFIDAEHALDPVYARNLGVDIDNLLVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPKAELDGEM
GDAHVGLQARLMSQALRKLAGVIAKSRTVAIFINQLREKVGVLFGSPETTPGGRALKFYASVRLDVRKVEQVKQGTEIIG
SRTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGTELDIVKKSGAWYSLGEDRLGQGREAAKEFLRDHPEVAASI
ENQIRVKTGLVKTAAAAVEEEGAQDG

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=890885 MCACP_RS06240 WP_406678485.1 1212349..1213389(+) (recA) [Moorella sp. ACPs]
GTGGTTTTATCGGACAAGCAGCGGGCCCTGGAAAATGCCCTGCTCCAGATCGAGAGGCACTTCGGCAAGGGTTCCATAAT
GAAGCTGGGGGAATCCGGTGCCCGGCTCAATGTAGAAGCCATTTCCACCGGCGCCCTGCCCCTGGATCTGGCCCTGGGGG
TAGGCGGGCTGCCCCGGGGTCGGGTGGTGGAAATCTTTGGCCCGGAATCCTCGGGTAAGACGACGGTGGCCCTGCATGTC
ATAGCCGAGGCCCAGCGGGGCGGCGGCACGGCAGCCTTTATCGACGCCGAGCACGCCCTCGACCCGGTGTATGCCAGGAA
CCTGGGCGTCGACATTGACAACCTTTTAGTATCCCAGCCCGATACCGGCGAGCAGGCCCTGGAAATAGCCGAAGCCCTGG
TGCGCAGCGGCGCCATCGATGTCATTGTCATCGATTCCGTAGCCGCCCTGGTGCCCAAAGCTGAGCTGGACGGTGAAATG
GGCGACGCCCATGTGGGCCTGCAGGCCAGGCTCATGTCCCAGGCTCTACGCAAGCTGGCCGGCGTTATTGCCAAATCGCG
CACCGTTGCTATTTTTATCAACCAGTTGCGGGAAAAGGTAGGGGTCCTCTTCGGCAGTCCCGAGACGACACCCGGGGGAC
GGGCGCTGAAATTTTATGCTTCGGTGCGCCTGGATGTGCGCAAAGTAGAGCAGGTCAAGCAGGGGACCGAGATTATTGGC
AGCCGCACCCGGGTAAAGGTTGTTAAAAATAAAGTGGCGCCGCCCTTCCGCCAGGCCGAATTTGATATTATTTACGGCCG
GGGTATTGACCGCGAGGGTTGCCTGCTTGACATGGGCACGGAATTGGATATAGTAAAGAAGAGTGGAGCTTGGTATTCCC
TGGGGGAGGATCGCCTCGGCCAGGGCCGGGAAGCAGCCAAAGAGTTCCTGCGCGACCACCCCGAAGTGGCGGCCAGCATT
GAAAACCAGATCCGCGTTAAAACCGGGTTAGTAAAGACGGCCGCAGCGGCGGTAGAAGAGGAAGGTGCGCAAGACGGATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.512

94.798

0.659
  recA Latilactobacillus sakei subsp. sakei 23K

65.152

95.376

0.621
  recA Streptococcus mitis SK321

61.671

100

0.618
  recA Ralstonia pseudosolanacearum GMI1000

64.438

95.087

0.613
  recA Streptococcus mitis NCTC 12261

60.807

100

0.61
  recA Pseudomonas stutzeri DSM 10701

65.015

93.353

0.607
  recA Neisseria gonorrhoeae MS11

63.804

94.22

0.601
  recA Neisseria gonorrhoeae MS11

63.804

94.22

0.601
  recA Neisseria gonorrhoeae strain FA1090

63.804

94.22

0.601
  recA Glaesserella parasuis strain SC1401

64.688

92.486

0.598
  recA Streptococcus pneumoniae D39

62.349

95.954

0.598
  recA Streptococcus pneumoniae Rx1

62.349

95.954

0.598
  recA Streptococcus pneumoniae R6

62.349

95.954

0.598
  recA Streptococcus pneumoniae TIGR4

62.349

95.954

0.598
  recA Acinetobacter baylyi ADP1

64.174

92.775

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.651

97.688

0.592
  recA Streptococcus mutans UA159

61.446

95.954

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.824

98.555

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

92.775

0.59
  recA Vibrio cholerae strain A1552

63.551

92.775

0.59
  recA Acinetobacter baumannii D1279779

63.24

92.775

0.587
  recA Streptococcus pyogenes NZ131

61.702

95.087

0.587
  recA Helicobacter pylori strain NCTC11637

61.35

94.22

0.578
  recA Helicobacter pylori 26695

61.043

94.22

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

94.798

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

92.775

0.558