Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHFGQ_RS06015 Genome accession   NZ_CP136419
Coordinates   1158817..1159851 (+) Length   344 a.a.
NCBI ID   WP_170066126.1    Uniprot ID   -
Organism   Moorella humiferrea strain 64-FGQ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153817..1164851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHFGQ_RS05990 (MHFGQ_11960) - 1153863..1154705 (+) 843 WP_170066120.1 helix-turn-helix domain-containing protein -
  MHFGQ_RS05995 (MHFGQ_11970) rimO 1154702..1156000 (+) 1299 WP_106004290.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MHFGQ_RS06000 (MHFGQ_11980) - 1156091..1156636 (+) 546 WP_106004291.1 hypothetical protein -
  MHFGQ_RS06005 (MHFGQ_11990) - 1156629..1158131 (+) 1503 WP_106004292.1 AAA family ATPase -
  MHFGQ_RS06010 (MHFGQ_12000) thpR 1158202..1158780 (+) 579 WP_106004293.1 RNA 2',3'-cyclic phosphodiesterase -
  MHFGQ_RS06015 (MHFGQ_12010) recA 1158817..1159851 (+) 1035 WP_170066126.1 recombinase RecA Machinery gene
  MHFGQ_RS06020 (MHFGQ_12020) - 1159835..1160332 (+) 498 WP_106004295.1 regulatory protein RecX -
  MHFGQ_RS06025 (MHFGQ_12030) rny 1160563..1162095 (+) 1533 WP_170066127.1 ribonuclease Y -
  MHFGQ_RS06030 (MHFGQ_12040) - 1162224..1162751 (+) 528 WP_245907742.1 hypothetical protein -
  MHFGQ_RS06035 (MHFGQ_12050) - 1162800..1163585 (+) 786 WP_106004298.1 TIGR00282 family metallophosphoesterase -
  MHFGQ_RS06040 (MHFGQ_12060) - 1163572..1164432 (+) 861 WP_106004299.1 PHP domain-containing protein -
  MHFGQ_RS06045 (MHFGQ_12070) - 1164481..1164747 (+) 267 WP_106004300.1 translation initiation factor 2 -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36825.19 Da        Isoelectric Point: 6.3730

>NTDB_id=890867 MHFGQ_RS06015 WP_170066126.1 1158817..1159851(+) (recA) [Moorella humiferrea strain 64-FGQ]
MSPDKQRALETALLQIERHFGKGSIMKLGENGARLNVEAISTGALPLDVALGVGGLPRGRVIEIFGPESSGKTTVALHVV
AEAQRNGGAAAFIDAEHALDPVYAKNLGVDIDNLLVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPRAELDGEMG
DAHVGLQARLMSQALRKLAGVIAKSRTVAIFINQLREKVGVLFGSPETTPGGRALKFYASVRLDVRKLDQVKQGTEIIGS
RTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGTELDIVKKSGAWYSLGEERLGQGREAAKEYLRNHPEVAAAIE
NQIRIKTGLVKVETGDAAEGAEER

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=890867 MHFGQ_RS06015 WP_170066126.1 1158817..1159851(+) (recA) [Moorella humiferrea strain 64-FGQ]
ATTTCTCCAGATAAACAGCGGGCTTTGGAAACGGCCTTACTTCAGATTGAAAGACACTTCGGCAAGGGCTCCATTATGAA
GCTGGGTGAAAACGGCGCCCGCCTCAATGTAGAAGCAATCTCCACAGGCGCCCTGCCCCTGGATGTGGCCCTGGGGGTGG
GGGGGCTGCCGCGTGGCCGGGTGATAGAGATTTTTGGACCGGAGTCTTCGGGAAAAACGACGGTCGCCCTGCACGTCGTA
GCGGAGGCCCAGCGTAACGGGGGTGCGGCGGCCTTTATCGATGCCGAACACGCCCTTGATCCAGTTTATGCCAAAAATTT
GGGCGTGGATATTGATAATCTTCTCGTCTCGCAGCCGGATACCGGCGAACAGGCCCTGGAAATAGCCGAAGCGCTGGTGC
GCAGCGGGGCCATCGACGTCATTGTCATCGATTCCGTAGCCGCCTTGGTACCCCGTGCCGAACTGGACGGTGAAATGGGC
GACGCCCATGTAGGACTTCAGGCAAGACTTATGTCCCAGGCCTTGCGCAAGCTGGCGGGCGTTATCGCCAAATCGCGTAC
GGTGGCCATTTTCATCAACCAGCTACGGGAAAAGGTGGGCGTCCTTTTCGGCAGCCCCGAAACCACTCCGGGCGGGCGAG
CCCTGAAATTTTATGCTTCGGTACGCCTCGACGTACGCAAGCTTGACCAGGTAAAACAGGGAACGGAGATAATCGGCAGC
CGCACCAGGGTCAAGGTTGTTAAAAACAAAGTCGCTCCTCCTTTCCGTCAGGCTGAATTCGACATTATTTACGGCCGGGG
AATAGATCGGGAAGGCTGCCTTCTTGACATGGGGACAGAATTAGATATAGTAAAGAAGAGTGGGGCCTGGTATTCACTGG
GGGAGGAACGCCTGGGACAGGGACGCGAGGCGGCGAAGGAATACCTGCGTAATCATCCAGAAGTGGCAGCGGCCATTGAA
AACCAGATTCGGATAAAAACTGGATTGGTGAAGGTGGAAACAGGGGACGCGGCCGAAGGTGCAGAGGAAAGGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.018

94.767

0.654
  recA Ralstonia pseudosolanacearum GMI1000

64.14

99.709

0.64
  recA Streptococcus mitis SK321

62.609

100

0.628
  recA Latilactobacillus sakei subsp. sakei 23K

64.865

96.802

0.628
  recA Streptococcus pneumoniae D39

64.048

96.221

0.616
  recA Streptococcus pneumoniae R6

64.048

96.221

0.616
  recA Streptococcus pneumoniae TIGR4

64.048

96.221

0.616
  recA Streptococcus pneumoniae Rx1

64.048

96.221

0.616
  recA Streptococcus mitis NCTC 12261

63.444

96.221

0.61
  recA Pseudomonas stutzeri DSM 10701

63.804

94.767

0.605
  recA Neisseria gonorrhoeae MS11

62.918

95.64

0.602
  recA Neisseria gonorrhoeae MS11

62.918

95.64

0.602
  recA Neisseria gonorrhoeae strain FA1090

62.918

95.64

0.602
  recA Lactococcus lactis subsp. cremoris KW2

62.236

96.221

0.599
  recA Streptococcus pyogenes NZ131

62.614

95.64

0.599
  recA Acinetobacter baylyi ADP1

62.963

94.186

0.593
  recA Streptococcus mutans UA159

59.13

100

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.012

100

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.654

94.186

0.59
  recA Vibrio cholerae strain A1552

62.654

94.186

0.59
  recA Acinetobacter baumannii D1279779

62.654

94.186

0.59
  recA Helicobacter pylori strain NCTC11637

61.35

94.767

0.581
  recA Glaesserella parasuis strain SC1401

62.5

93.023

0.581
  recA Helicobacter pylori 26695

61.043

94.767

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

93.314

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.537

95.349

0.558