Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RQN46_RS01110 Genome accession   NZ_CP136414
Coordinates   236508..237551 (+) Length   347 a.a.
NCBI ID   WP_353066496.1    Uniprot ID   -
Organism   Arcanobacterium hippocoleae strain StanS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231508..242551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQN46_RS01075 (RQN46_01090) pgsA 232106..232702 (+) 597 WP_309955328.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RQN46_RS01080 (RQN46_01095) - 232756..233130 (+) 375 WP_353066489.1 nicotinamide-nucleotide amidohydrolase family protein -
  RQN46_RS01085 - 233145..233249 (+) 105 WP_353067370.1 hypothetical protein -
  RQN46_RS01090 (RQN46_01100) - 233398..233763 (+) 366 WP_309955325.1 helix-turn-helix transcriptional regulator -
  RQN46_RS01095 (RQN46_01105) - 234000..234242 (+) 243 WP_309955323.1 DUF3046 domain-containing protein -
  RQN46_RS01100 (RQN46_01110) - 234335..234616 (+) 282 WP_353066492.1 hypothetical protein -
  RQN46_RS01105 (RQN46_01115) - 234916..236262 (+) 1347 WP_353066494.1 hypothetical protein -
  RQN46_RS01110 (RQN46_01120) recA 236508..237551 (+) 1044 WP_353066496.1 recombinase RecA Machinery gene
  RQN46_RS01115 (RQN46_01125) - 237941..238399 (+) 459 WP_353066498.1 regulatory protein RecX -
  RQN46_RS01120 (RQN46_01130) miaB 238555..240095 (+) 1541 Protein_208 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  RQN46_RS01125 (RQN46_01135) miaA 240095..241051 (+) 957 WP_309955313.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  RQN46_RS01130 (RQN46_01140) - 241244..241801 (-) 558 WP_353066500.1 methyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36758.05 Da        Isoelectric Point: 6.3122

>NTDB_id=890795 RQN46_RS01110 WP_353066496.1 236508..237551(+) (recA) [Arcanobacterium hippocoleae strain StanS]
MAVSKDDNRAKALEVALGQIDKAFGKGSAMRLGDKPPASVKVIPTGSLSLDVALGIGGLPRGRIVEVYGPESSGKTTVAL
HAVANAQKAGGIAAFVDAEHALDPEYARKLGVDTDSLIVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEG
EMGDSHVGLQARLMSQALRKLTGALSASGTTAIFINQLREKIGVFYGNPETTTGGKALKFYASVRLDVRRGEALKEGANP
VGNRTKVKIVKNKMAPPFKQAEFDILYGEGISREGGIIDMAVETGIAKRSGAWYTYEGDQLGQGKEKARQFLKDNPEIAA
EIEIKVKRKLGVAGFRDEEVISEAESV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=890795 RQN46_RS01110 WP_353066496.1 236508..237551(+) (recA) [Arcanobacterium hippocoleae strain StanS]
ATGGCAGTAAGTAAAGATGACAATCGTGCGAAAGCGCTCGAAGTAGCACTTGGGCAAATTGATAAAGCCTTTGGTAAAGG
GTCGGCGATGCGTCTTGGCGATAAGCCTCCTGCTTCAGTGAAAGTAATTCCCACTGGCTCGTTATCTTTAGATGTAGCGC
TCGGGATTGGTGGTTTGCCACGCGGGCGAATCGTTGAAGTTTATGGCCCGGAATCATCTGGTAAAACCACAGTGGCGCTA
CACGCAGTAGCAAATGCGCAAAAAGCTGGTGGAATTGCGGCATTTGTGGATGCTGAACATGCGCTTGATCCAGAATATGC
ACGTAAACTTGGTGTAGATACTGATTCACTGATTGTTTCACAGCCAGATACCGGCGAGCAGGCATTAGAAATTGCAGATA
TGCTGATTCGTTCCGGGGCGTTGGATATTATCGTCATCGATTCGGTTGCAGCGCTCGTGCCGAAAGCTGAGATCGAAGGC
GAAATGGGTGATTCACATGTGGGCTTGCAAGCGCGCTTGATGTCACAAGCCTTGCGGAAACTCACTGGTGCACTTTCCGC
TTCCGGTACGACGGCAATTTTTATCAACCAGTTACGGGAAAAAATTGGCGTATTTTACGGTAATCCAGAAACTACTACGG
GTGGAAAAGCACTGAAATTTTATGCCTCAGTGCGTCTCGATGTGCGTCGCGGGGAAGCACTAAAAGAAGGTGCAAATCCG
GTCGGCAATCGCACAAAAGTAAAGATTGTAAAGAACAAGATGGCTCCACCATTTAAGCAAGCGGAATTCGATATTTTATA
TGGTGAAGGAATTTCCCGTGAAGGTGGAATTATCGATATGGCGGTTGAAACCGGTATTGCGAAACGCTCGGGTGCCTGGT
ATACCTACGAAGGCGATCAGCTTGGGCAAGGGAAAGAAAAAGCGCGGCAGTTCTTAAAGGATAATCCAGAGATTGCAGCA
GAAATTGAAATCAAAGTAAAACGGAAACTTGGCGTTGCTGGATTCCGGGACGAAGAAGTAATTTCAGAAGCAGAGAGCGT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.769

93.66

0.625
  recA Pseudomonas stutzeri DSM 10701

66.154

93.66

0.62
  recA Acinetobacter baylyi ADP1

65.538

93.66

0.614
  recA Acinetobacter baumannii D1279779

64.438

94.813

0.611
  recA Vibrio cholerae strain A1552

65.231

93.66

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.231

93.66

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.832

94.236

0.611
  recA Neisseria gonorrhoeae MS11

64.832

94.236

0.611
  recA Neisseria gonorrhoeae MS11

64.832

94.236

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.746

95.389

0.608
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.202

0.602
  recA Lactococcus lactis subsp. cremoris KW2

62.202

96.83

0.602
  recA Streptococcus pneumoniae R6

60.234

98.559

0.594
  recA Streptococcus pneumoniae D39

60.234

98.559

0.594
  recA Streptococcus pneumoniae Rx1

60.234

98.559

0.594
  recA Streptococcus pneumoniae TIGR4

60.234

98.559

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.194

96.542

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

61.078

96.254

0.588
  recA Streptococcus mutans UA159

61.818

95.101

0.588
  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585
  recA Streptococcus mitis NCTC 12261

61.89

94.524

0.585
  recA Streptococcus mitis SK321

61.89

94.524

0.585
  recA Helicobacter pylori 26695

61.774

94.236

0.582
  recA Streptococcus pyogenes NZ131

61.094

94.813

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.696

91.931

0.576
  recA Glaesserella parasuis strain SC1401

61.728

93.372

0.576