Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RWA16_RS12580 Genome accession   NZ_CP136128
Coordinates   2704649..2705842 (-) Length   397 a.a.
NCBI ID   WP_087912917.1    Uniprot ID   A0AAN1F0K8
Organism   Lacticaseibacillus casei strain LMG 24099     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2699649..2710842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA16_RS12555 (RWA16_12555) - 2699745..2700446 (-) 702 WP_070651421.1 histidine phosphatase family protein -
  RWA16_RS12560 (RWA16_12560) - 2700608..2701420 (-) 813 WP_087912913.1 Cof-type HAD-IIB family hydrolase -
  RWA16_RS12565 (RWA16_12565) - 2701516..2701998 (+) 483 WP_087912914.1 ribonuclease H -
  RWA16_RS12570 (RWA16_12570) - 2702004..2702906 (-) 903 WP_087912915.1 LysR family transcriptional regulator -
  RWA16_RS12575 (RWA16_12575) - 2703173..2704378 (+) 1206 WP_087912916.1 PLP-dependent aminotransferase family protein -
  RWA16_RS12580 (RWA16_12580) recA 2704649..2705842 (-) 1194 WP_087912917.1 recombinase RecA Machinery gene
  RWA16_RS12585 (RWA16_12585) - 2706280..2706978 (+) 699 WP_047107059.1 DUF554 domain-containing protein -
  RWA16_RS12590 (RWA16_12590) - 2707056..2707529 (-) 474 WP_087912918.1 hypothetical protein -
  RWA16_RS14460 - 2707526..2707889 (-) 364 Protein_2449 hypothetical protein -
  RWA16_RS12595 (RWA16_12595) - 2708126..2710111 (-) 1986 WP_087912919.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43073.94 Da        Isoelectric Point: 5.4288

>NTDB_id=888760 RWA16_RS12580 WP_087912917.1 2704649..2705842(-) (recA) [Lacticaseibacillus casei strain LMG 24099]
MAKKTTTKNANTKSDTTDRETELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEIYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKK
GQQVKDGKDVIGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLVTEKDSKFDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEAKIREQAAPKKPEETDDDKKDAKKDVKSTDEAKTEKPAETDEKQDDKKDDPSSFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=888760 RWA16_RS12580 WP_087912917.1 2704649..2705842(-) (recA) [Lacticaseibacillus casei strain LMG 24099]
ATGGCGAAAAAAACGACCACAAAGAATGCGAATACAAAATCTGATACCACAGATCGCGAAACCGAATTAGAAAAGGCGCT
GCAGAAAATCAAGAAGGCGTTTGGTGAAGGCGCCGTGATGAAAATGGGTGATCGGCCGGAACTGAAGGTTGATGTTGTTT
CGACTGGCATTCTTTCATTAGATTTGGCACTTGGTGTCGGCGGGTTGCCACGCGGCCGGATTGTGGAAATCTATGGTCCT
GAAAGTACCGGGAAAACCACAATTGCGTTACAGACGATCGCCGAGTTGCAAAAATCCGGCGGCAAGGCGGCTTATATTGA
TGCCGAAAACGCGATGGATCCAAAATATGCGGCTGAACTTGGGGTTAACATTGATGATCTTTTGTTATCCCAGCCAAACT
CGGGCGAACAGGGATTGGAAATTGCTGAAATGCTGATCGAATCCGCCGCCGTTGATATTGTCGTGATTGATTCCGTTGCC
GCTTTGGTTCCCAAGGCTGAAATTGAAGGCGCCATTGGTGACAGTCATGTCGGCTTACAAGCGCGGTTAATGTCGCAAGC
ACTGCGTAAAATGGCCGGGTCGATTAACAATACCAATACATTGGTCATCTTTATCAATCAATTGCGGGAAAAAGTCGGTG
TGATGTTTGGTAATCCGGAAGTCACGCCGGGCGGACGCGCTTTGAAGTTTTATGCCTCGGTTCGTATTGAGGTTAAAAAG
GGCCAGCAAGTCAAGGATGGCAAAGATGTGATCGGTTTTGCCAGCAAGCTGAAGGTTACCAAGAACAAGGTGGCGCCACC
ATTTAAGACGGTTGAAACCACGATGTCATTTGGTCATGGGATTGAGCACAACACCGACATGATCAACTTAGTGACGGAAA
AAGACAGTAAATTTGACGTCATTACGAAGTCAGGATCCTGGTATAACTACGGCAAAGAGCGTTTGGGCCAAGGCCTTGTG
AACGCCTCCCATTATCTTGATGAACATCCGGAAATTTCTAAGGAAATCGAAGCCAAAATCCGTGAACAGGCCGCACCTAA
GAAGCCTGAAGAAACGGACGACGACAAGAAGGACGCTAAAAAAGACGTCAAGTCAACCGACGAAGCCAAGACTGAAAAGC
CAGCTGAGACCGATGAAAAGCAGGATGACAAGAAAGATGATCCATCAAGCTTTGGCGTTGACCGGTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

57.333

94.458

0.542
  recA Streptococcus pyogenes NZ131

57.995

92.947

0.539
  recA Streptococcus mitis SK321

57.067

94.458

0.539
  recA Streptococcus pneumoniae R6

56.764

94.962

0.539
  recA Streptococcus pneumoniae TIGR4

56.764

94.962

0.539
  recA Streptococcus pneumoniae Rx1

56.764

94.962

0.539
  recA Streptococcus pneumoniae D39

56.764

94.962

0.539
  recA Streptococcus mutans UA159

55.181

97.229

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

81.612

0.516
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

61.468

82.368

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.213

85.139

0.479
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.258

88.917

0.474
  recA Glaesserella parasuis strain SC1401

54.651

86.65

0.474
  recA Pseudomonas stutzeri DSM 10701

57.407

81.612

0.469
  recA Acinetobacter baylyi ADP1

55.224

84.383

0.466
  recA Ralstonia pseudosolanacearum GMI1000

58.599

79.093

0.463
  recA Neisseria gonorrhoeae MS11

58.28

79.093

0.461
  recA Neisseria gonorrhoeae strain FA1090

58.28

79.093

0.461
  recA Neisseria gonorrhoeae MS11

58.28

79.093

0.461
  recA Acinetobacter baumannii D1279779

56.075

80.856

0.453
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.538

81.864

0.438
  recA Vibrio cholerae strain A1552

53.538

81.864

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.538

81.864

0.438
  recA Helicobacter pylori strain NCTC11637

52.454

82.116

0.431
  recA Helicobacter pylori 26695

52.454

82.116

0.431