Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RS891_RS11695 Genome accession   NZ_CP135922
Coordinates   2551408..2552472 (+) Length   354 a.a.
NCBI ID   WP_113052592.1    Uniprot ID   A0A329QYG1
Organism   Paenibacillus sp. BIC5C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2546408..2557472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS891_RS11670 - 2546974..2548011 (+) 1038 WP_315795344.1 RodZ family helix-turn-helix domain-containing protein -
  RS891_RS11675 - 2548080..2548250 (+) 171 WP_157258470.1 hypothetical protein -
  RS891_RS11680 - 2548404..2548895 (+) 492 WP_017689115.1 YajQ family cyclic di-GMP-binding protein -
  RS891_RS11685 pgsA 2549218..2549805 (+) 588 WP_063566359.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RS891_RS11690 - 2549912..2551168 (+) 1257 WP_113052593.1 competence/damage-inducible protein A -
  RS891_RS11695 recA 2551408..2552472 (+) 1065 WP_113052592.1 recombinase RecA Machinery gene
  RS891_RS11700 - 2552802..2553539 (+) 738 WP_113052591.1 regulatory protein RecX -
  RS891_RS11705 rny 2553850..2555391 (+) 1542 WP_053783853.1 ribonuclease Y -
  RS891_RS11710 - 2555554..2556348 (+) 795 WP_024630289.1 TIGR00282 family metallophosphoesterase -
  RS891_RS11715 - 2556466..2556726 (+) 261 WP_019005392.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38317.65 Da        Isoelectric Point: 5.0863

>NTDB_id=887716 RS891_RS11695 WP_113052592.1 2551408..2552472(+) (recA) [Paenibacillus sp. BIC5C1]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVEIIPSGSLALDIALGTGGLPKGRIVEIYGPESSGKTTVALHAIAE
VQRVGGQAAFIDAEHALDPQYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKSGNDIIGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFMKEHAQIAQVIEQK
IREASNLTTAVPAPTTEDQQKEAAEEQELFEINE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=887716 RS891_RS11695 WP_113052592.1 2551408..2552472(+) (recA) [Paenibacillus sp. BIC5C1]
TTGTCAGACCGTCGTGCCGCGCTTGATATGGCGCTCCGTCAAATAGAGAAGCAATTTGGTAAAGGATCCATCATGAAACT
GGGTGAGTCGACTCACATGCAAGTGGAAATCATACCCAGCGGTTCCTTGGCTCTGGATATTGCATTAGGAACAGGCGGCT
TGCCTAAAGGCCGTATTGTTGAAATATATGGACCAGAATCTTCCGGTAAAACAACTGTAGCATTGCATGCGATTGCTGAA
GTACAACGGGTGGGTGGACAAGCTGCATTTATCGATGCAGAGCATGCTCTTGACCCGCAATACGCAAGCAAACTGGGTGT
TAACATTGATGAGTTGCTTCTGTCTCAGCCAGATACGGGTGAGCAAGGGCTTGAAATTGCAGAAGCACTTGTACGTAGTG
GCGCTGTGGATATTGTCGTTATTGACTCCGTTGCTGCATTGGTACCAAAAGCGGAAATCGAAGGCGAAATGGGTGATTCC
CATGTCGGTTTGCAAGCGCGTCTGATGTCTCAGGCGTTGCGTAAACTGTCTGGTGCAATCAGCAAATCCAAAACCATCGC
AATCTTCATCAACCAGCTTCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCGGAGACAACACCTGGTGGTCGTGCCCTGA
AATTTTACTCTACAGTGCGTCTGGATGTACGTCGTATTGAGAGTATTAAATCAGGCAATGACATCATCGGTAACCGTACT
CGTATCAAAGTTGTAAAAAACAAAGTGGCACCACCGTTTAAACAAGCGGAAGTGGACATTATGTACGGAGAAGGTATTTC
GAGAGAAGGCAGTATCATTGATATTGGTACAGAGCTGGACATCGTTAACAAAAGTGGTGCGTGGTACTCTTACGAAGGCG
AGCGTTTAGGTCAAGGACGTGAGAACGCGAAGCAGTTCATGAAAGAGCATGCACAGATTGCTCAAGTGATTGAACAAAAA
ATTCGCGAAGCCAGCAATCTGACTACTGCAGTTCCTGCCCCTACAACTGAAGATCAACAAAAAGAAGCGGCAGAAGAACA
AGAATTGTTTGAAATTAACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A329QYG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.569

92.373

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

73.021

96.328

0.703
  recA Streptococcus pneumoniae TIGR4

65.169

100

0.655
  recA Streptococcus pneumoniae Rx1

65.169

100

0.655
  recA Streptococcus pneumoniae D39

65.169

100

0.655
  recA Streptococcus pneumoniae R6

65.169

100

0.655
  recA Streptococcus mutans UA159

64.444

100

0.655
  recA Streptococcus pyogenes NZ131

70.37

91.525

0.644
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.22

0.638
  recA Streptococcus mitis NCTC 12261

68.615

91.808

0.63
  recA Streptococcus mitis SK321

68.308

91.808

0.627
  recA Acinetobacter baylyi ADP1

61.364

99.435

0.61
  recA Vibrio cholerae strain A1552

66.355

90.678

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

90.678

0.602
  recA Neisseria gonorrhoeae MS11

63.772

94.35

0.602
  recA Neisseria gonorrhoeae MS11

63.772

94.35

0.602
  recA Neisseria gonorrhoeae strain FA1090

63.772

94.35

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

92.655

0.599
  recA Pseudomonas stutzeri DSM 10701

62.426

95.48

0.596
  recA Ralstonia pseudosolanacearum GMI1000

67.197

88.701

0.596
  recA Acinetobacter baumannii D1279779

61.947

95.763

0.593
  recA Glaesserella parasuis strain SC1401

60.29

97.458

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.704

96.328

0.585
  recA Helicobacter pylori 26695

62.539

91.243

0.571
  recA Helicobacter pylori strain NCTC11637

62.229

91.243

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

91.243

0.545