Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RS893_RS26570 Genome accession   NZ_CP135918
Coordinates   6197767..6198846 (+) Length   359 a.a.
NCBI ID   WP_315788598.1    Uniprot ID   -
Organism   Fischerella sp. JS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6192767..6203846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS893_RS26545 - 6192835..6194112 (+) 1278 WP_315792109.1 ABC transporter ATP-binding protein -
  RS893_RS26550 - 6194597..6195598 (+) 1002 WP_315788594.1 glycosyltransferase -
  RS893_RS26555 - 6195662..6195844 (+) 183 WP_315788595.1 hypothetical protein -
  RS893_RS26560 xseB 6195858..6196097 (-) 240 WP_315788596.1 exodeoxyribonuclease VII small subunit -
  RS893_RS26565 xseA 6196138..6197370 (-) 1233 WP_315788597.1 exodeoxyribonuclease VII large subunit -
  RS893_RS26570 recA 6197767..6198846 (+) 1080 WP_315788598.1 recombinase RecA Machinery gene
  RS893_RS26575 - 6199042..6199785 (-) 744 WP_315788599.1 FHA domain-containing protein -
  RS893_RS26580 - 6200393..6202009 (-) 1617 WP_315788600.1 serine/threonine-protein kinase -
  RS893_RS26585 - 6202377..6202538 (+) 162 WP_315788601.1 metallothionein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38656.82 Da        Isoelectric Point: 4.9814

>NTDB_id=887653 RS893_RS26570 WP_315788598.1 6197767..6198846(+) (recA) [Fischerella sp. JS2]
MAVNTDNAGKQKALNMVLNQIERTFGKGTIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTLAL
HAVAEVQKNGGIAAYVDAEHALDPTYAAALGVDTENLLVSQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGISYGNPETTTGGNALKYYASVRLDIRRIQTLKKGTEE
FGNRVKVKVAKNKVAPPFRVAEFDIIFGRGISTLGCLVDLAEETGVLNRKGAWYSYNGDNISQGRDNAIKYLEEKSEFAE
QIKQLVREKLEKGAVVSATSVRKTNEDEDEDMDDASEEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=887653 RS893_RS26570 WP_315788598.1 6197767..6198846(+) (recA) [Fischerella sp. JS2]
ATGGCTGTTAATACTGATAATGCTGGCAAGCAAAAAGCGCTCAACATGGTACTCAACCAAATTGAGCGTACTTTTGGCAA
AGGAACAATCATGCGCTTGGGCGACGCTACCCGGATGCGGGTAGAAACCATCTCCAGTGGGGCGCTGACATTGGATTTGG
CGTTAGGCGGTGGTTTACCTAAAGGTCGGGTGATAGAGATTTATGGCCCAGAAAGTTCTGGTAAGACGACTTTAGCACTA
CACGCCGTTGCAGAAGTACAAAAAAATGGCGGTATTGCTGCCTATGTTGATGCAGAACACGCCCTCGACCCCACCTATGC
TGCGGCTTTAGGCGTAGATACAGAGAACTTATTGGTTTCTCAACCAGATACAGGAGAAGCAGCATTAGAAATTGTCGATC
AACTCGTTCGTTCAGCAGCAGTAGATATAGTTGTTATTGACTCGGTAGCAGCCCTAGTCCCCCGTGCGGAAATTGAAGGT
GATATGGGCGATGCCCACGTTGGTCTTCAGGCAAGATTGATGAGCCAAGCTCTGCGTAAAATAACTGGTAACATTGGTAA
ATCTGGCTGCACAGTAATCTTCCTCAACCAGTTACGACAAAAAATTGGTATCAGCTACGGTAATCCAGAGACTACAACTG
GTGGTAATGCTCTCAAATATTACGCTTCGGTACGCTTGGATATCCGCCGGATTCAAACCCTGAAAAAAGGAACCGAGGAA
TTTGGTAATCGCGTCAAAGTCAAAGTTGCTAAAAATAAAGTCGCGCCACCTTTTAGAGTTGCAGAATTTGACATTATTTT
TGGTAGAGGTATTTCTACCTTGGGTTGTCTTGTAGATTTAGCAGAAGAAACTGGCGTACTCAACCGTAAGGGAGCATGGT
ATAGTTACAATGGCGACAATATTTCCCAAGGTCGAGATAACGCCATTAAGTACTTAGAAGAAAAATCGGAATTTGCTGAA
CAAATTAAGCAACTAGTAAGAGAAAAATTAGAAAAAGGAGCTGTTGTTTCCGCTACCTCTGTTAGGAAGACAAACGAAGA
CGAAGACGAAGATATGGATGATGCTTCTGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

62.281

95.265

0.593
  recA Acinetobacter baylyi ADP1

61.877

94.986

0.588
  recA Pseudomonas stutzeri DSM 10701

60.997

94.986

0.579
  recA Ralstonia pseudosolanacearum GMI1000

63.11

91.365

0.577
  recA Glaesserella parasuis strain SC1401

57.79

98.329

0.568
  recA Neisseria gonorrhoeae MS11

63.125

89.136

0.563
  recA Neisseria gonorrhoeae MS11

63.125

89.136

0.563
  recA Neisseria gonorrhoeae strain FA1090

63.125

89.136

0.563
  recA Helicobacter pylori 26695

60.542

92.479

0.56
  recA Helicobacter pylori strain NCTC11637

60.542

92.479

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

61.875

89.136

0.552
  recA Streptococcus mitis NCTC 12261

55.462

99.443

0.552
  recA Streptococcus mitis SK321

55.462

99.443

0.552
  recA Vibrio cholerae strain A1552

60.87

89.694

0.546
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.87

89.694

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

88.858

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.036

92.479

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

92.479

0.546
  recA Streptococcus pneumoniae D39

59.271

91.643

0.543
  recA Streptococcus pneumoniae R6

59.271

91.643

0.543
  recA Streptococcus pneumoniae TIGR4

59.271

91.643

0.543
  recA Streptococcus pneumoniae Rx1

59.271

91.643

0.543
  recA Streptococcus mutans UA159

59.877

90.251

0.54
  recA Streptococcus pyogenes NZ131

57.975

90.808

0.526
  recA Lactococcus lactis subsp. cremoris KW2

57.538

90.529

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.522

93.315

0.518