Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | RS161_RS07070 | Genome accession | NZ_CP135697 |
| Coordinates | 1458354..1459415 (-) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Escherichia coli strain TUM2367 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1426863..1459415 | 1458354..1459415 | within | 0 |
Gene organization within MGE regions
Location: 1426863..1459415
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RS161_RS06890 (RS161_06890) | gabT | 1426863..1428143 (+) | 1281 | WP_000625041.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| RS161_RS06895 (RS161_06895) | gabP | 1428380..1429780 (+) | 1401 | WP_001296312.1 | GABA permease | - |
| RS161_RS06900 (RS161_06900) | csiR | 1429801..1430463 (+) | 663 | WP_000156817.1 | DNA-binding transcriptional regulator CsiR | - |
| RS161_RS06905 (RS161_06905) | kbp | 1430464..1430913 (-) | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| RS161_RS06910 (RS161_06910) | yqaE | 1430997..1431155 (-) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| RS161_RS06915 (RS161_06915) | ygaV | 1431338..1431637 (+) | 300 | WP_000137288.1 | ArsR/SmtB family transcription factor | - |
| RS161_RS06920 (RS161_06920) | ygaP | 1431647..1432171 (+) | 525 | WP_001229463.1 | thiosulfate sulfurtransferase YgaP | - |
| RS161_RS06925 (RS161_06925) | stpA | 1432218..1432622 (-) | 405 | WP_000115381.1 | DNA-binding protein StpA | - |
| RS161_RS06930 (RS161_06930) | alaE | 1433290..1433739 (+) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| RS161_RS06935 (RS161_06935) | ygaC | 1433776..1434120 (-) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| RS161_RS06940 (RS161_06940) | ygaM | 1434272..1434601 (+) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| RS161_RS06945 (RS161_06945) | nrdH | 1434848..1435093 (+) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| RS161_RS06950 (RS161_06950) | nrdI | 1435090..1435500 (+) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| RS161_RS06955 (RS161_06955) | nrdE | 1435473..1437617 (+) | 2145 | WP_000246582.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| RS161_RS06960 (RS161_06960) | nrdF | 1437627..1438586 (+) | 960 | WP_000777934.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| RS161_RS06965 (RS161_06965) | proV | 1438942..1440144 (+) | 1203 | WP_000985509.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| RS161_RS06970 (RS161_06970) | proW | 1440137..1441201 (+) | 1065 | WP_000774966.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| RS161_RS06975 (RS161_06975) | proX | 1441258..1442250 (+) | 993 | WP_001216534.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| RS161_RS06980 (RS161_06980) | - | 1442442..1443626 (+) | 1185 | WP_000165701.1 | MFS transporter | - |
| RS161_RS06985 (RS161_06985) | ygaZ | 1443750..1444487 (+) | 738 | WP_000445658.1 | L-valine exporter subunit YgaZ | - |
| RS161_RS06990 (RS161_06990) | ygaH | 1444477..1444812 (+) | 336 | WP_000119749.1 | L-valine transporter subunit YgaH | - |
| RS161_RS06995 (RS161_06995) | emrR | 1444903..1445433 (+) | 531 | WP_000378443.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| RS161_RS07000 (RS161_07000) | emrA | 1445560..1446732 (+) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| RS161_RS07005 (RS161_07005) | emrB | 1446749..1448287 (+) | 1539 | WP_001296316.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| RS161_RS07010 (RS161_07010) | - | 1448545..1449252 (+) | 708 | WP_001097132.1 | RNA ligase family protein | - |
| RS161_RS07015 (RS161_07015) | - | 1449249..1450361 (+) | 1113 | WP_000638136.1 | ATP-binding protein | - |
| RS161_RS07020 (RS161_07020) | luxS | 1450412..1450927 (-) | 516 | WP_001130208.1 | S-ribosylhomocysteine lyase | - |
| RS161_RS07025 (RS161_07025) | gshA | 1451077..1452633 (-) | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| RS161_RS07030 (RS161_07030) | yqaA | 1452706..1453134 (-) | 429 | WP_001287462.1 | YqaA family protein | - |
| RS161_RS07035 (RS161_07035) | yqaB | 1453131..1453697 (-) | 567 | WP_000273309.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| RS161_RS07055 (RS161_07055) | csrA | 1454606..1454791 (-) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| RS161_RS07060 (RS161_07060) | alaS | 1455026..1457656 (-) | 2631 | WP_000047157.1 | alanine--tRNA ligase | - |
| RS161_RS07065 (RS161_07065) | recX | 1457785..1458285 (-) | 501 | WP_000140501.1 | recombination regulator RecX | - |
| RS161_RS07070 (RS161_07070) | recA | 1458354..1459415 (-) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=887463 RS161_RS07070 WP_000963143.1 1458354..1459415(-) (recA) [Escherichia coli strain TUM2367]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=887463 RS161_RS07070 WP_000963143.1 1458354..1459415(-) (recA) [Escherichia coli strain TUM2367]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCAGAATCTTCCGGTAAAACCACGCTGACGTTGCAGGTG
ATCGCCGCAGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACTGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CACGTTCTGGTGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTTATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCAGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCAGAATCTTCCGGTAAAACCACGCTGACGTTGCAGGTG
ATCGCCGCAGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACTGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CACGTTCTGGTGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTTATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCAGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.