Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RRL13_RS17675 Genome accession   NZ_CP135498
Coordinates   3740791..3741849 (-) Length   352 a.a.
NCBI ID   WP_182062193.1    Uniprot ID   -
Organism   Enterobacter cloacae strain isolateB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3735791..3746849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL13_RS17660 (RRL13_17660) csrA 3737036..3737221 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  RRL13_RS17665 (RRL13_17665) alaS 3737463..3740090 (-) 2628 WP_315686582.1 alanine--tRNA ligase -
  RRL13_RS17670 (RRL13_17670) recX 3740222..3740722 (-) 501 WP_315686584.1 recombination regulator RecX -
  RRL13_RS17675 (RRL13_17675) recA 3740791..3741849 (-) 1059 WP_182062193.1 recombinase RecA Machinery gene
  RRL13_RS17680 (RRL13_17680) pncC 3741941..3742438 (-) 498 WP_014071491.1 nicotinamide-nucleotide amidase -
  RRL13_RS17685 (RRL13_17685) - 3742568..3743446 (-) 879 WP_315686587.1 metal ABC transporter substrate-binding protein -
  RRL13_RS17690 (RRL13_17690) - 3743461..3744321 (-) 861 WP_315686588.1 metal ABC transporter permease -
  RRL13_RS17695 (RRL13_17695) - 3744318..3744971 (-) 654 WP_315686590.1 metal ABC transporter ATP-binding protein -
  RRL13_RS17700 (RRL13_17700) mltB 3745284..3746384 (-) 1101 WP_315686593.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37824.23 Da        Isoelectric Point: 4.8055

>NTDB_id=886890 RRL13_RS17675 WP_182062193.1 3740791..3741849(-) (recA) [Enterobacter cloacae strain isolateB]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSTPDFAVDGANVEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=886890 RRL13_RS17675 WP_182062193.1 3740791..3741849(-) (recA) [Enterobacter cloacae strain isolateB]
ATGGCTATCGACGAGAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCACTGGGCG
CTGGCGGTTTGCCAATGGGCCGTATCGTAGAAATCTACGGGCCAGAATCCTCCGGCAAAACGACCCTGACCTTACAGGTT
ATTGCAGCTGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAACACGCGCTGGACCCGGTCTATGCCCGTAA
GCTGGGTGTTGATATCGACAACCTGCTGTGTTCTCAGCCAGACACAGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGTTCCGGTGCTGTTGACGTTATCGTAGTCGACTCCGTTGCTGCACTAACGCCAAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTTATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGGAACCCGGAAACCACTACCGGTGGTA
ACGCACTGAAATTCTACGCGTCTGTCCGTCTTGATATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAGAACGTGGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCTGCACCGTTCAAACAAGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTTCGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGACAAGATTGGTCAGGGTAAAGCGAATGCCATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAAATT
GAGAAGAAAGTTCGTGAACTGCTGCTGAACAACCAGGATTCAACACCTGATTTCGCGGTTGATGGCGCGAACGTTGAAGA
AACTAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

73.887

95.739

0.707
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

68.966

98.864

0.682
  recA Ralstonia pseudosolanacearum GMI1000

68.563

94.886

0.651
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus mitis SK321

58.689

99.716

0.585
  recA Streptococcus mitis NCTC 12261

58.689

99.716

0.585
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557